Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Erwinia tracheiphila SCR3

 Score =  125 bits (314), Expect = 1e-33
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 26/303 (8%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKK-RVKAEYKLEAGDVVRVPPV 71
           I E   GQR+D  L     +  +S +   +    V VN     + + K+  G+ + +   
Sbjct: 11  IAESQLGQRLDQALAELFPDYSRSRIKDWILNRRVTVNGAITARPKEKVLGGEQITIK-- 68

Query: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRA 131
             E++E+          K  ++   IVYEDD +LI+NKP    VH G+G   G +  L A
Sbjct: 69  -AEIEEDVRW-------KAQDIALDIVYEDDDILIINKPHNLVVHPGAGNPDGTV--LNA 118

Query: 132 LRPQARFL------ELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGH 185
           L  +   +       +VHR+D+DT+G+++VAK   A  HL    + + + + Y A+ +G 
Sbjct: 119 LLHRYPAICDVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVESLQLREITREYEAVAIGR 178

Query: 186 WDAECKVVNAPLLKNEVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRV 245
             A   V       +   + + V+P GKP+ T +RI+E F   T ++    TGRTHQIRV
Sbjct: 179 MTAGGSVDEPISRHSTKRTHMAVHPMGKPATTHYRIMEHFRAHTRMRLRLETGRTHQIRV 238

Query: 246 HTQYMGHPIAWDDRYGDR-------RFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIH 298
           H  ++ HP+  D  YG R         +  +A    +R  LHA  ++  HP +  ++E H
Sbjct: 239 HMSHINHPLVGDPLYGGRPRPPKGASDNFISALRKFDRQALHATMLRLYHPITGIEMEWH 298

Query: 299 APL 301
           APL
Sbjct: 299 APL 301