Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., 23S rRNA pseudouridine(1911,1915,1917) synthase from Escherichia coli BL21

 Score =  131 bits (330), Expect = 2e-35
 Identities = 95/314 (30%), Positives = 156/314 (49%), Gaps = 24/314 (7%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDVVRVPPV 71
           + E+  GQR+D  L     +  +S +   +    V VN K   K + K+  G+ V +   
Sbjct: 11  VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI--- 67

Query: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALR 130
             E++E     P        ++   IVYED+ ++I+NKP    VH G+G   G +  AL 
Sbjct: 68  NAEIEEEARFEPQ-------DIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120

Query: 131 ALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
              P    +    +VHR+D+DT+G+++VAK   A   L    + + + + Y A+ +GH  
Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180

Query: 188 AECKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRVH 246
           A    V+ P+ ++      + V+P GKP+ T +RI+E F   T ++    TGRTHQIRVH
Sbjct: 181 AG-GTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239

Query: 247 TQYMGHPIAWDDRYGDR------RFDAYTAQF-GIERLFLHAANIQFVHPASEKKLEIHA 299
             ++ HP+  D  YG R        +A+ +     +R  LHA  ++  HP S  ++E HA
Sbjct: 240 MAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHA 299

Query: 300 PLEAHLEQALTKMR 313
           P+   + + +  MR
Sbjct: 300 PIPQDMVELIEVMR 313