Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., Ribosomal large subunit pseudouridine synthase D from Alteromonas macleodii MIT1002

 Score =  137 bits (346), Expect = 3e-37
 Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 32/313 (10%)

Query: 19  GQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVTVEVKEN 78
           G R+D  L +      +S +   ++ G V VN            G+V+ VP   +++ E 
Sbjct: 20  GLRLDQVLADLFPEYSRSKLKTWIQDGNVAVN------------GEVITVPRHKMQMDEL 67

Query: 79  EPAPPSTKLSKVAELEHC---IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQ 135
                   +   +E +     IVYED+H+L++NKP+   VH G+G   G +  L AL   
Sbjct: 68  VTVQAEMDVQVTSEAQDIALNIVYEDEHILVINKPADLVVHPGAGNPSGTV--LNALLNH 125

Query: 136 ARFLE------LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAE 189
              ++      +VHR+D+DT+G+++VAK   A  HL  Q + + + + Y A+ +G   A 
Sbjct: 126 CPEIDKVPRAGIVHRLDKDTTGLMVVAKTIPAQTHLVDQLQRREMSREYEAVALGTMVAG 185

Query: 190 CKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQ 248
             +V+AP+ ++      + V   GKP+ T FR++EKF   T ++    TGRTHQIRVH  
Sbjct: 186 -GIVDAPIGRHATKRTHMAVREMGKPAVTHFRVIEKFRAYTHLRLKLETGRTHQIRVHMA 244

Query: 249 YMGHPIAWDDRYGDR-------RFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPL 301
           ++ HP+  D  YG R         +   A  G +R  LHAA +   HP +E+ +   APL
Sbjct: 245 HIKHPLLGDQVYGGRPRLPKGASEEFIAALRGFQRQALHAAQLSLFHPETEEWMTWKAPL 304

Query: 302 EAHLEQALTKMRQ 314
              ++  L  +++
Sbjct: 305 PQDMQDLLKAVKK 317