Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., Ribosomal large subunit pseudouridine synthase C from Alteromonas macleodii MIT1002

 Score =  362 bits (930), Expect = e-105
 Identities = 186/310 (60%), Positives = 231/310 (74%), Gaps = 6/310 (1%)

Query: 3   EIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEA 62
           E   +V+F+ ++ D+AGQRIDNFLR QLK +PKS++YRILRKGEVRVNK RVK EYKL+A
Sbjct: 4   EAPQKVRFVTVEADLAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKGRVKPEYKLQA 63

Query: 63  GDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLH 122
            D++R+PPV   V E  PAP S KL K+A LE  I++EDD +L++NKPSG AVHGGSGL 
Sbjct: 64  DDLIRIPPV--RVSEGAPAP-SPKLDKIASLESHILFEDDRILVINKPSGMAVHGGSGLS 120

Query: 123 FGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALV 182
           FG IE LRALRP A+F+ELVHR+DRDTSG +L+AKKRSALRH+  Q R   + K Y ALV
Sbjct: 121 FGLIEGLRALRPDAKFMELVHRLDRDTSGCILIAKKRSALRHMHEQLRTGKMDKRYNALV 180

Query: 183 MGHWDAECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVTGR 239
            G W      V APL KN + S   +V V+ +GKPSETR+RILE++A ATLV+ASP+TGR
Sbjct: 181 AGEWPKTRFKVKAPLRKNVLQSGERMVSVSDDGKPSETRYRILEEYAGATLVEASPITGR 240

Query: 240 THQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHA 299
           THQIRVH  + GHPIA D +YGD  FDA   Q G+ RLFLHA +I  +HPA+E+++   A
Sbjct: 241 THQIRVHCLHAGHPIACDPKYGDADFDAAMRQKGLNRLFLHARSISLLHPATEERVTFTA 300

Query: 300 PLEAHLEQAL 309
           PL+  L   L
Sbjct: 301 PLDDTLSNTL 310