Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., Ribosomal large subunit pseudouridine synthase C from Acinetobacter radioresistens SK82

 Score =  258 bits (660), Expect = 1e-73
 Identities = 144/312 (46%), Positives = 207/312 (66%), Gaps = 20/312 (6%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           V + ++DE  AGQRIDNFL ++LK +PKS +YR++R+G+VRVNKKR+KAE KL  GD VR
Sbjct: 10  VTWFEVDEHQAGQRIDNFLFSRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLAIGDQVR 69

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           V P+  E K+  P P S K+++   L   ++YED+ L+++NKPSG AVHGGSG+ +G IE
Sbjct: 70  VAPIRFEPKDETPVPVSDKVAQ--GLLSRVIYEDEGLMVVNKPSGIAVHGGSGVAYGLIE 127

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
            LRA   + ++LELVHRIDRDTSG+++++KKRS L+ LQ   RE  ++K Y A+V G   
Sbjct: 128 GLRAATGK-KYLELVHRIDRDTSGLVMISKKRSVLKTLQDLLREHKIKKTYAAIVKGQVS 186

Query: 188 AECKVVNAPLLKNEV---NSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIR 244
            + ++++APL + E+      VRV+  GK S+T++ + E+F  ATLV ASP++GRTHQIR
Sbjct: 187 LDQQLIDAPLYRYELANGERRVRVSKEGKDSKTQWNVAERFMHATLVYASPLSGRTHQIR 246

Query: 245 VHTQYMGHPIAWDDRYGDRRFDAYTAQFGIE--RLFLHAANIQFV-HPASEKKLEIHAPL 301
           VH   +GHP+  DD+YG       T   G +  RL LHA  ++   +P       I APL
Sbjct: 247 VHGLSIGHPLVGDDKYGHE-----TEYKGPKPRRLCLHAIRLEIPGYPT------IEAPL 295

Query: 302 EAHLEQALTKMR 313
              ++    ++R
Sbjct: 296 PEDMQSLAAQLR 307