Pairwise Alignments

Query, 324 a.a., DNA polymerase III subunit delta' from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score =  136 bits (343), Expect = 6e-37
 Identities = 99/330 (30%), Positives = 156/330 (47%), Gaps = 30/330 (9%)

Query: 8   YPWLVPVWQPW-QAGLAAGKISSATLIQASEGVGVESLVELMARTLMCTSSQ-SEPCGFC 65
           YPW   ++  W QAG +      A L+    G+G  +    MA  L+C   +    CG C
Sbjct: 5   YPWQATLFAQWMQAGQSR---HHALLLHGKTGIGKLAFARAMAAALLCLQPEHGHACGQC 61

Query: 66  HSCGLMQSGNHPDFHVVKPE------------KIGKSITVEQIRQMNR-IAQESSQLSGY 112
            SC  +  G HPDF  + PE            +  + I ++QIR ++  ++  S ++ G 
Sbjct: 62  QSCHWLSEGAHPDFREITPEDEDSAEGSKKKTRKRQQILIDQIRALHDYLSLSSHRVEGM 121

Query: 113 RLIVIEPADAMNESSANALLKTLEEPAPNCLFILVTSRIKHLLPTIVSRCQRLVLPAPTT 172
           R+++I P +AMN +++NALLK LEEP     F+LV+ + + LLPTI+SRC ++ +P P+ 
Sbjct: 122 RVVLIHPLEAMNVAASNALLKLLEEPPQRTQFLLVSHQRQALLPTILSRCMQVEMPVPSE 181

Query: 173 ALVVEWLKGQGITTPAYALHLCADSPLKTRAFMLEGGAEKYHELESQLMNALSGDVNAQL 232
           +  ++W++ QGI  P +  H    +P+      L+  A  Y + +  L      DV A +
Sbjct: 182 SQGLQWMQSQGIAQPEWLWHYSGGAPITVLQDDLDWYA-WYQQFQPHLRRGAEIDVVAAV 240

Query: 233 KCIALIDADLTTHLYWVWCVLTDAQKIHFGVQQDYYPPASAALAGRFTYSKLHVQTASLE 292
             +     +    +   W  L D           Y+P  +AAL G        VQ + L 
Sbjct: 241 PVLIKQGMEAAIQVLQKW--LLDVWLSCHQQPLRYHPSEAAALQGLAG----RVQLSRLL 294

Query: 293 RLMEQLNQFS-----GLNTELLLLQWLYQF 317
              +QLN+F       LN EL L Q L Q+
Sbjct: 295 AFQQQLNRFKMTAQHPLNQELQLEQLLLQY 324