Pairwise Alignments

Query, 255 a.a., YchF/TatD family DNA exonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., preprotein translocase subunit TatD from Pseudomonas simiae WCS417

 Score =  110 bits (274), Expect = 4e-29
 Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 16/263 (6%)

Query: 3   VDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQ---- 58
           +D   +L    + + H     VLD+A+ A V+ L+  G  ++   + L + E   +    
Sbjct: 4   IDIGVNLTNSSFDEKH---QAVLDRAYAAGVQQLVLTGTHIEGSEQALELCEKLDESGQR 60

Query: 59  VYASCGVHPLDVQSDFSLDLFHQYA---QHPRVVAIGETGLDYHYQPETADLQKLRFRQQ 115
           ++++ G+HP    SD++ D   +        RV A+GE GLD++        Q+    + 
Sbjct: 61  LFSTAGIHPHSA-SDWNGDSAKRLRGLLSESRVRAVGECGLDFNRDFSPRPQQEKVLEEH 119

Query: 116 IETAVALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDLAFAQAAMELGFYISI 175
           +  AV L  P+ +H R+A Q  L++L++ +      V+HCFT +     + ++L  +I I
Sbjct: 120 LALAVELKLPVFLHERDANQRLLEILKDYRDHLTAAVVHCFTGEQQALFSYLDLDLHIGI 179

Query: 176 SG-IVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGK----ENQPAYVVEVAAYI 230
           +G I   R+ T L  +V+ +P +RL++E+D+PYL P   R K     N+PAY+ EV   +
Sbjct: 180 TGWICDERRGTHLHPLVREIPRERLMLESDAPYLLPRTLRPKPKNGRNEPAYLPEVLREV 239

Query: 231 AALKGVSLTEVAQKTTQNFQNLF 253
           A  +  S+ ++A+ +T   +  F
Sbjct: 240 ALHRNESMEDLARHSTACARRFF 262