Pairwise Alignments

Query, 255 a.a., YchF/TatD family DNA exonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  189 bits (479), Expect = 6e-53
 Identities = 98/252 (38%), Positives = 152/252 (60%), Gaps = 7/252 (2%)

Query: 1   MFVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVY 60
           M +D+HCHLD   + D  A+  D++ +AH + V  ++++   +   P++L + + +  V+
Sbjct: 1   MLIDTHCHLD---FPDFEAERDDIIARAHASGVSQMVTISTRVRRLPELLKIADKYPSVF 57

Query: 61  ASCGVHP--LDVQSDFSLDLFHQYAQ-HPRVVAIGETGLDYHYQPETADLQKLRFRQQIE 117
            S G HP   D + D S D   + A+ H ++VAIGE GLDY Y  +  + QK    + IE
Sbjct: 58  CSVGTHPNNADEELDISADELVRLAESHDKIVAIGEAGLDYFYDTQKPEDQKTGLIRHIE 117

Query: 118 TAVALNKPLIIHTRNAQQDTLQLLR-EGKAQQCGGVIHCFTEDLAFAQAAMELGFYISIS 176
            A     PL+IH+R+A  D   +LR E        ++HCF+     A+A +ELG Y+S S
Sbjct: 118 AARRTKLPLVIHSRSADDDMAAILRAESGKGAFPFILHCFSAGPELAKAGVELGGYVSFS 177

Query: 177 GIVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAALKGV 236
           GI+TF ++ D++++   +PLDRLL+ETD+PYLAP   RGK N+P+YVV  A  +A + GV
Sbjct: 178 GILTFPKSQDIRDIAATVPLDRLLVETDAPYLAPKRWRGKRNEPSYVVNTAEVLAEVHGV 237

Query: 237 SLTEVAQKTTQN 248
           S   +A+ TT+N
Sbjct: 238 SFEHMAEITTEN 249