Pairwise Alignments

Query, 500 a.a., PTS glucose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., PTS N-acetyl-D-glucosamine transporter from Pseudomonas simiae WCS417

 Score =  345 bits (884), Expect = 3e-99
 Identities = 199/473 (42%), Positives = 285/473 (60%), Gaps = 22/473 (4%)

Query: 25  MFKNAFANLQKVGKALMLPVSVLPVAGILLGVGAANFSWLPEVVSHLMEQAGGSVFGQMP 84
           M+++    LQ++G+ALMLP+++LP+AG+LL +G  +   +      +M  AG ++F  + 
Sbjct: 1   MYQHFIEGLQRLGRALMLPIAILPIAGLLLRLGDTDLLNIA-----VMHDAGQAIFANLA 55

Query: 85  LLFAVGVALGFT-NNDGVSGLSAIVGYGIMVATLKVMATVMGVSGIDTGVLGGILAGGVA 143
           L+FA+G+A+GF  +N+G +GL+  +GY +MV+TLKVM T      I+ G+L GI +G +A
Sbjct: 56  LIFAIGIAVGFARDNNGTAGLAGAIGYLVMVSTLKVMDT-----SINMGMLAGIASGLMA 110

Query: 144 AWSFNRFYKIQLPEYLGFFAGKRAVPIITGFISIALGVVLSFIWPPIGSAIATFSDWAAN 203
              +NRF  I+LPEYL FF G+R VPI+TGF ++ LGV+   IWPPI   I +F      
Sbjct: 111 GGLYNRFKDIKLPEYLAFFGGRRFVPIVTGFSAVGLGVIFGLIWPPIQHGINSFGVLLME 170

Query: 204 QDPVTAFGIYGIVERSLIPFGLHHIWNVPFFYQAGTCVNGA-GETVNGIMTCFLTADDAS 262
              + AF ++G+  R LI  GLHHI N   ++  G+  +   G  V G +T +   D   
Sbjct: 171 SGSLGAF-VFGVFNRLLIVTGLHHILNNMAWFVFGSFTDPVTGAVVTGDLTRYFAGDPK- 228

Query: 263 RAAGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPI 322
              G  F  + G +   +FGLPAA  A+   A PE R  + GI  S ALTSFLTG+TEPI
Sbjct: 229 ---GGQF--MTGMFPVMLFGLPAACLAMYRNALPERRKVMGGIFLSMALTSFLTGVTEPI 283

Query: 323 EFAFLFVAPVLYAIHAVLAGLAYVLTNALGVVHGHTFSNGFIDFVVQSPRADNMLLLVGL 382
           EFAF+F+AP LY IHAVL GL+  +TN L +  G TFS GFID V+   ++ N  L+  +
Sbjct: 284 EFAFMFLAPFLYLIHAVLTGLSMAVTNMLNIHLGFTFSGGFIDMVLGWGKSTNGWLVFPV 343

Query: 383 GIGYAVLYYVVFTFVIRALNLKTPGRED-ESADKSASSGNELAGDLVAAFGGKANITNLD 441
           G+ YA++YY VF + IR  NLKTPGRED +     A S N+ A   + A GG  N+ ++ 
Sbjct: 344 GLAYALIYYSVFNYCIRHFNLKTPGREDTQVVQAEAMSDNQRATAYIQALGGAQNLLSVG 403

Query: 442 ACITRLRVSVADTALVDQDKLKKLGAAGVVMV--SGGVQAIFGTKSDNLKTEM 492
           AC TRLR+ + D       +LK LGA  VV     G +Q + G  +D++  E+
Sbjct: 404 ACTTRLRLDMVDRNKAVDAELKALGAMAVVRPGNGGSLQVVVGPMADSIADEI 456



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 430 AFGGKANITNLDA-CITRLRVSVADTALVDQDKLKKLGAAGVVMVSGGV-QAIFGTKSDN 487
           A GG+ N+  L+A  +TRLRV + D + + +  L  LG  GV  +  GV   + G K+  
Sbjct: 491 ALGGRGNVRQLEAVAMTRLRVELGDDSGLSEADLTALGCQGVSQLESGVWHLLIGDKATG 550

Query: 488 LKTEMDEWI 496
           L   ++  +
Sbjct: 551 LGEALERLV 559