Pairwise Alignments

Query, 500 a.a., PTS glucose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

 Score =  318 bits (814), Expect = 4e-91
 Identities = 193/518 (37%), Positives = 275/518 (53%), Gaps = 64/518 (12%)

Query: 28  NAFANLQKVGKALMLPVSVLPVAGILLGVGAANFSWLPEVVSHLMEQAGGSVFGQMPLLF 87
           N     QK+GKALMLP++ LPVA +LL +G  +   +P      M  AG ++F Q+PLLF
Sbjct: 2   NILGYAQKLGKALMLPIATLPVAALLLRLGQPDLLGIP-----FMAAAGDAIFSQLPLLF 56

Query: 88  AVGVALGFTNN-DGVSGLSAIVGYGIMVATLKVMATVMGVSGIDTGVLGGILAGGVAAWS 146
            +G+A+G + +  G +GL+  V Y ++ AT K +      + I+    GGI AG +A  S
Sbjct: 57  GLGIAIGLSKDGSGAAGLAGAVAYFVLSATAKTID-----ASINMSFFGGIFAGIIAGHS 111

Query: 147 FNRFYKIQLPEYLGFFAGKRAVPIITGFISIALGVVLSFIWPPIGSAIATFSDWAANQDP 206
           +N F+  +LPE+L FFAGKR VPI+ G  ++  G +   IWP I   +   +   +    
Sbjct: 112 YNAFHTTRLPEWLAFFAGKRLVPIMAGLFALVAGALSGVIWPSIQGGLDALAHAVSTSGA 171

Query: 207 VTAFGIYGIVERSLIPFGLHHIWNVPFFYQAGTC-------VNGAGETVNGI-------- 251
           +  F +YG + R+LIP GLHH+ N  F++  GTC          AG+ +  +        
Sbjct: 172 LGQF-VYGTLNRALIPVGLHHVLNSYFWFGMGTCQEILVSGAQAAGQALPALEKLCVDPA 230

Query: 252 -----------------------------MTCFLTADDASRAAGN--GFGQLAGGYL-FK 279
                                        +T  + + D  R  G     G    G+    
Sbjct: 231 LAKTLVVGQEHTFAFKNAVTPEITAVVKEVTEVVKSGDLHRFFGGDKSAGVFMNGFFPVM 290

Query: 280 MFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFAFLFVAPVLYAIHAV 339
           MFGLP AA A+   A  E R +V G + S A  SFLTGITEP+EF F+F+AP LYA+HAV
Sbjct: 291 MFGLPGAALAMYLAAPAERRHQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAMHAV 350

Query: 340 LAGLAYVLTNALGVVHGHTFSNGFIDFVVQSPRADNMLLLVGLGIGYAVLYYVVFTFVIR 399
             GL+ V+ N  G +HG  FS G IDF++    A     L  +G+ +  LY+  FTF IR
Sbjct: 351 FTGLSLVVANMFGTLHGFGFSAGLIDFLLNWGLATKPATLFVIGLAFFALYFFTFTFAIR 410

Query: 400 ALNLKTPGREDESADKSASSGNELAGDL----VAAFGGKANITNLDACITRLRVSVADTA 455
           A NLK+PGREDE  +    S +   GDL    + A GG  N+T++DACITRLR+++ D +
Sbjct: 411 AFNLKSPGREDEEVETETDSADASKGDLARQYLKALGGHENLTSIDACITRLRLTLKDRS 470

Query: 456 LVDQDKLKKLGAAGVVMV-SGGVQAIFGTKSDNLKTEM 492
           + D+  LKKLGA GVV +    +Q I G  ++ +  EM
Sbjct: 471 VADEAVLKKLGAKGVVKLGENNLQVILGPLAEIVAGEM 508