Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Na+-dependent transporters of the SNF family protein from Alteromonas macleodii MIT1002

 Score =  189 bits (479), Expect = 2e-52
 Identities = 144/471 (30%), Positives = 237/471 (50%), Gaps = 49/471 (10%)

Query: 3   REQWGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILEFS 62
           REQ+GSR+GF+LAA GSA+G+GN+  FP  A +NGGGAF + Y   +    +P M+ E S
Sbjct: 5   REQFGSRIGFILAAAGSAVGIGNLVGFPVGAAKNGGGAFLLMYAIFVFAICLPVMLAEMS 64

Query: 63  MG---QKHRGSAPTTLAKIHSKFEWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFTQSW 119
           +G   +K    A + ++    K++  GW  +    +IAV+Y+ +  W   Y   + + + 
Sbjct: 65  VGRHAKKDPLGAYSDISGNEKKWKVAGWLAIATPFMIAVFYMVITVWLFGYLFEAVSGNL 124

Query: 120 GSDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERASKIM 179
               N   F  ++    NS          I   M     + Y  + GGVK+GIE+A+K++
Sbjct: 125 DKLANPETFGLFI----NSEA--------IFLYMAAVVGVVYLILQGGVKEGIEKAAKLL 172

Query: 180 MPILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGFAIM 239
           MP LF+M++ L+  ++    A+ GV +   P+FSKI   +V   A  Q FF+LS+G  I+
Sbjct: 173 MPALFVMLIGLVIFVLTRENAMAGVEFYIVPEFSKI-TAEVVNGALSQAFFSLSLGMGIL 231

Query: 240 LAYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIF-SVLGYMAQEQGKPLTEVVSAGVG 298
           + Y SY+ +++D+ + A +  L +   +  AG+MI  ++  +        L+E   + VG
Sbjct: 232 ITYGSYIDKRADVPSAAKLVALTDTAVAFTAGLMILPAIFSFNPDINPDDLSE---SSVG 288

Query: 299 LAFVTLPAAINLL--PIPY----ILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSR 352
           + F  LP+    L   I Y    I+  LFFL +  A ++S +SI E   +AL+D+ G SR
Sbjct: 289 MIFTYLPSIFLALQDSIGYMGASIVASLFFLLVFFAAITSLVSIFEVPVAALMDEKGVSR 348

Query: 353 KKAANIVIGIGFLVSMAFATNGGLL---------------LLDLV-DHFANNVGIMASCL 396
           K A   +  I  L+++  A + G +               L D++ D F + +  +   L
Sbjct: 349 KWALGSLGSIMILLAILSALSFGKVDMLTSFMHYAGADKSLFDVIYDVFYDTILPLNGLL 408

Query: 397 VEL-VLMTWLLKISDVRKYVNSISDFSVGVWF----DICLRFVSPVILAII 442
           + L V+  W  K ++    +   S    G WF    DI L+   P+IL +I
Sbjct: 409 ICLFVIYRW--KSANFNASLEEGSSGYKGSWFEKYVDISLKTFIPLILLVI 457