Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Na+-dependent transporters of the SNF family protein from Alteromonas macleodii MIT1002

 Score =  188 bits (478), Expect = 3e-52
 Identities = 138/454 (30%), Positives = 226/454 (49%), Gaps = 33/454 (7%)

Query: 3   REQWGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILEFS 62
           R ++ SR+GFVLAA GSA+GLGNIW FP     NGG AF + YL        P ++ E  
Sbjct: 4   RGEFSSRIGFVLAAAGSAVGLGNIWGFPTKVASNGGAAFVLVYLLLAFVLAYPVLMAELI 63

Query: 63  MGQKHRGSAPTTLAKIHSKF--EWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFTQSWG 120
           +G+  R +    L KI   F     G +     ++I  +Y  V GW + YF  +     G
Sbjct: 64  IGRSSRSNMVDALGKISGNFAGRLTGIWGCVTVSLILAFYAIVGGWMLVYFADAAVSMVG 123

Query: 121 SDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERASKIMM 180
             T+A   S++L           S+  +I F  L   +  +  +VGGVK GIE+ S  +M
Sbjct: 124 F-TSA---SDWLLTS--------SVTRNIIFCFLFMGLTAFI-VVGGVKSGIEKWSVRLM 170

Query: 181 PILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML 240
           P L I++L LI  +   PGA++G +    PDFS++ D  +   A GQ FF++S+G   ML
Sbjct: 171 PTLVILILALIVYVSLQPGAVEGWSAYLVPDFSRVLDPDLLINAMGQAFFSMSLGVGTML 230

Query: 241 AYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQGKPLTEVVSA---GV 297
            Y SYL +  ++ +      L++ G +V+AG++I   + Y+A   G  +     A   G 
Sbjct: 231 VYGSYLSKNENLPSIGASVALVDIGVAVIAGMLIIPAM-YVALNNGVEIFTPEGALIQGD 289

Query: 298 GLAFVTLPAAINLL-PIPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRKKAA 356
            L F  LPA  + +  +   +   FF  + +A ++S IS++E   + +++  G  RKKA 
Sbjct: 290 TLIFKVLPALFDTIGSVGLFVAFTFFALMAIAAVTSSISMLEVPVAFMVESKGLQRKKAV 349

Query: 357 NIVIGIGFLVSMAFATNGGLL---LLDLVDHFANNVGIMASCLVELVLMTWLLK---ISD 410
            ++  + F++S     N   L   ++ L   ++  +  +A C    +   W+ +   I D
Sbjct: 350 LLMASVIFVLSCIIILNFETLFGFVIALTTEYSQPLLGLALC----IFAGWVWRRDAILD 405

Query: 411 VRKYVNSISDFSV--GVWFDICLRFVSPVILAII 442
             K  +  ++ S+   +W    +RFV PVI+A++
Sbjct: 406 ELKQGDQFAEHSIFWKIW-PWYVRFVCPVIIALM 438



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 39/187 (20%)

Query: 290 TEVVSAGVGLAFVTLPAAINLLPIPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLG 349
           T+V S G G AFV +      L + ++L     +A ++ G SS         S ++D LG
Sbjct: 32  TKVASNG-GAAFVLV-----YLLLAFVLAYPVLMAELIIGRSSR--------SNMVDALG 77

Query: 350 WSRKKAANIVIGIGFLVSMA-----FATNGGLLLLDLVDHFANNVGIMASCLVELVLMTW 404
                 A  + GI   V+++     +A  GG +L+   D   + VG  ++         W
Sbjct: 78  KISGNFAGRLTGIWGCVTVSLILAFYAIVGGWMLVYFADAAVSMVGFTSAS-------DW 130

Query: 405 LLKISDVRKYV-----NSISDFSV--GV------WFDICLRFVSPVILAIIVATKLQALF 451
           LL  S  R  +       ++ F V  GV      W    +  +  +ILA+IV   LQ   
Sbjct: 131 LLTSSVTRNIIFCFLFMGLTAFIVVGGVKSGIEKWSVRLMPTLVILILALIVYVSLQPGA 190

Query: 452 TEGYGGY 458
            EG+  Y
Sbjct: 191 VEGWSAY 197