Pairwise Alignments

Query, 405 a.a., ROK family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., Xylose-responsive transcription regulator, ROK family from Variovorax sp. SCN45

 Score =  104 bits (260), Expect = 4e-27
 Identities = 78/275 (28%), Positives = 131/275 (47%), Gaps = 17/275 (6%)

Query: 12  IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAISRG 71
           +K++N   + +L+  +  +SR  L+ ES L  ++++ + RELID   + E+    A   G
Sbjct: 10  VKRMNRSVLLRLLRAQPGLSRARLAGESGLTKSTVSLLVRELIDEDWLSESGAAVADGLG 69

Query: 72  RPAVGLQTNNLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDVLARLLFEI 131
           RP+  L+ N      + + +    + +    L GEVL      +     D   A    ++
Sbjct: 70  RPSTPLRINVGVRALMGVEIAVETVRLVCMSLQGEVLYSDTQAL----ADSAPAGACAQV 125

Query: 132 EEFFQTYAAQLD----RVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKA---T 184
                   A+L+    R++SI + +PG V+   G+V   P+   +N++L P + KA    
Sbjct: 126 ARMASVAQARLEQLGLRLSSIGVCVPGAVDDCTGVVRFAPNLGWRNVSLLPALEKAFGAV 185

Query: 185 GLP---VFVANDTRAWALAEKLFGHS---QDVDNSVLISIHHGLGAGIVLDGRVLQGRHG 238
           GLP   V + ND  A  L E  F  S   +  D  + ++   G+GAG+VL+ R+  G  G
Sbjct: 186 GLPRVTVQLQNDADAAVLGEYEFAASVGQEGEDPLIFVNCDVGVGAGVVLNDRLFTGAQG 245

Query: 239 NIGELGHIQIDPQGKRCHCGNYGCLETVASSQAIR 273
             GE+GH  ++  G  C CG  GC E    S+ +R
Sbjct: 246 MAGEIGHTILELDGPECSCGRRGCAEAFFGSRVLR 280