Pairwise Alignments

Query, 405 a.a., ROK family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  332 bits (852), Expect = 9e-96
 Identities = 171/401 (42%), Positives = 265/401 (66%), Gaps = 2/401 (0%)

Query: 4   AQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETT 63
           AQ G++D +KQ+N+  VY+LIDQ GPISRI ++++S+LAPAS+TKITR+LI+  LI E  
Sbjct: 7   AQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66

Query: 64  VQEAISRGRPAVGLQTNNLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDV 123
            Q+A + GR A+ + T    +  + +RLGR   T+ L++L  +V+ +    + E  Q+ +
Sbjct: 67  -QQASTGGRRAISIVTETRNFHAIGVRLGRHDTTLTLYDLSSKVVAEEHYPLPERTQETL 125

Query: 124 LARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKA 183
              LL  I  F  +   ++  + +I++ LPGLV+ E G++  MPH  V+N  L   + K 
Sbjct: 126 EHALLNTIAVFIDSCQRKIRELIAISVILPGLVDPESGVIRYMPHIQVENWGLVEALEKR 185

Query: 184 TGLPVFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGEL 243
             +  FV +D R+ ALAE  FG SQD ++S+L+ +H G GAGI+ +GR+  GR+GN+GE+
Sbjct: 186 FHVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245

Query: 244 GHIQIDPQGKRCHCGNYGCLETVASSQAIRDQVTARIQAGEPSCLATVEEISIEDICAAA 303
           GHIQ++P G+RCHCGN+GCLET+A++ AI  +V   ++ G  S    +++ +I+ IC AA
Sbjct: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-RVPLDDCTIKTICKAA 304

Query: 304 ADGDPLAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQSL 363
             GD LA +VI+ +GR+LG  IAI INLFNP+KI+I G I +A  +L P+IE CI  Q+L
Sbjct: 305 NRGDSLASEVIEHVGRHLGKTIAIAINLFNPQKIVIAGEIIEADKVLLPAIESCINTQAL 364

Query: 364 PVYHQDLKLVESRFYKQATMPGAALIKQALYDGLLLMKVVE 404
             + ++L +V S    ++ +   AL+K+A+ +G LL  ++E
Sbjct: 365 KAFRKNLPVVRSTLDHRSAIGAFALVKRAMLNGTLLQCLLE 405