Pairwise Alignments

Query, 405 a.a., ROK family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., N-acetylglucosamine-inducible nag divergent operon transcriptional repressor from Escherichia coli BL21

 Score =  335 bits (859), Expect = 1e-96
 Identities = 173/401 (43%), Positives = 264/401 (65%), Gaps = 2/401 (0%)

Query: 4   AQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETT 63
           AQ G++D +KQ+N+  VY+LIDQ GPISRI ++++S+LAPAS+TKITR+LI+  LI E  
Sbjct: 7   AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66

Query: 64  VQEAISRGRPAVGLQTNNLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDV 123
            Q+A + GR A+ + T    +  + +RLGR   TI L +L  +VL +    + E  Q  +
Sbjct: 67  -QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125

Query: 124 LARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKA 183
              LL  I +F  +Y  +L  + +I++ LPGLV+ + G +  MPH  V+N  L   + + 
Sbjct: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185

Query: 184 TGLPVFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGEL 243
             +  FV +D R+ ALAE  FG SQD ++S+L+ +H G GAGI+ +GR+  GR+GN+GE+
Sbjct: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245

Query: 244 GHIQIDPQGKRCHCGNYGCLETVASSQAIRDQVTARIQAGEPSCLATVEEISIEDICAAA 303
           GHIQ++P G+RCHCGN+GCLET+A++ AI  +V   ++ G  S    +++ +I+ IC AA
Sbjct: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-RVPLDDCTIKTICKAA 304

Query: 304 ADGDPLAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQSL 363
             GD LA +VI+ +GR+LG  IAI INLFNP+KI+I G I +A  +L P+IE CI  Q+L
Sbjct: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364

Query: 364 PVYHQDLKLVESRFYKQATMPGAALIKQALYDGLLLMKVVE 404
             +  +L +V S    ++ +   AL+K+A+ +G+LL  ++E
Sbjct: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405