Pairwise Alignments

Query, 405 a.a., ROK family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., N-acetylglucosamine repressor from Azospirillum sp. SherDot2

 Score =  136 bits (342), Expect = 1e-36
 Identities = 108/371 (29%), Positives = 176/371 (47%), Gaps = 14/371 (3%)

Query: 28  GPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLGWQFL 87
           G +SR +L+   + + +        LI   LI E  VQ +    RP V   ++ +G    
Sbjct: 22  GGLSRGELAASVDFSKSKANLAISSLIGRELIEEGGVQPSSGGRRPEVLRLSHRMG-VLA 80

Query: 88  SMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDD--VLARLLFEIEEFFQTYAAQLDRV 145
            + +G   + +AL      VL D + +  ++      V  R+   + E  +       RV
Sbjct: 81  GIDIGATSIDVALLAPDMTVL-DHRSEAADVRDGPAAVFGRVRDLLREARERMGIGPARV 139

Query: 146 TSIAITLPGLVNSEQGIVLQMPHY-NVKNLALGPEIYKATGLPVFVANDTRAWALAE--K 202
             I + +PG V  + G+++  P     +  ++   + +    PVFV ND    AL    +
Sbjct: 140 LGIGVGVPGPVAFDSGMLVNPPLLPGWETFSIREFLAEEYAAPVFVDNDVNIMALGTHWR 199

Query: 203 LFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGELGHIQIDPQGKRCHCGNYGC 262
           L G  Q   N ++I I  G+G GI+  G V +GR G+ G++GHI +DPQG  CHCGN GC
Sbjct: 200 LRGQLQ---NFLVIKIGTGIGCGIICHGLVYRGRDGSAGDVGHICVDPQGPVCHCGNAGC 256

Query: 263 LETVASSQAIRDQVTARIQAGEPSCLATVEE----ISIEDICAAAADGDPLAVDVIQQLG 318
           +E +A+  AI        + GE   L  + E    ++  D+  A+  GD  A  ++QQ G
Sbjct: 257 VEAMAAGPAIARMAEEAARGGESPRLMELLERNGALTTVDLGNASRAGDAAATAIVQQAG 316

Query: 319 RYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFY 378
             +G  +A V+N FNP  I IGG + +   +L  SI Q +  +SL +  + L +      
Sbjct: 317 GDIGRMLAAVVNFFNPSHIFIGGGVARIGPLLLASIRQSVYRRSLALSTRHLDIQYVPEV 376

Query: 379 KQATMPGAALI 389
           + A + GAA++
Sbjct: 377 ESAGVIGAAVM 387