Pairwise Alignments

Query, 314 a.a., chemotaxis protein CheV from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., chemotaxis protein CheW from Pseudomonas simiae WCS417

 Score =  157 bits (396), Expect = 4e-43
 Identities = 104/292 (35%), Positives = 157/292 (53%), Gaps = 14/292 (4%)

Query: 20  LELLLFSLNSRQIFAINVFKVREVIKVPLLTKMPGSHPHITGVASLRGEPVPVIDLRSAI 79
           L LLLF+L S ++ AIN+ KV E+I  P L K+P SHPH+ G+A+LRG  + VIDL  A+
Sbjct: 11  LSLLLFTLRSGKLMAINLLKVSEIIPCPPLIKLPESHPHVKGIATLRGNSLAVIDLSRAL 70

Query: 80  GFPPRRVQDTEQNLIITEYNRTIQGFLVGQVRNIINTAWTEIQPPP-KSAGRANYLTAFT 138
           G  P    D    LI+T+ +R+ QG  V  V  I++   T+I+PPP  S G   ++T  T
Sbjct: 71  GEMPLADPD-GGCLIVTDVSRSKQGLHVQAVSKIVHCLTTDIRPPPYGSGGNRAFITGVT 129

Query: 139 HVKEQDKTHIVEIIDVEKVLAEIVHYDASISKEVLDESLLNHMDGRTILIVDDSSTARNQ 198
            V    +  +V+++D+EKV+  I       +   L       +    IL+VDDS  A  Q
Sbjct: 130 QV----EGGLVQVLDIEKVIHGIAPAPIEAAPTDLTMEEAEVLGNARILVVDDSQVALQQ 185

Query: 199 VKDTLSQLGLNIIECHDGLQALNLLKSWCDEGKDIYSELLMMITDAEMPEMDGYKLTYEI 258
              TL  LGL         +A+++L     E +    ++ ++++D EM EMDGY LT  +
Sbjct: 186 SVHTLRNLGLTCHTARSAKEAIDVLL----ELQGTVEQINVVVSDIEMSEMDGYALTRTL 241

Query: 259 RNDPRMKDLFITLNTSLSGSFNEAMVQKVGCNRFISKF-QPDL---LVQVAQ 306
           R  P  + L++ L+TSL  + N    +  G +  ++KF  P+L   LV  AQ
Sbjct: 242 RETPDFQHLYVLLHTSLDSAMNSEKARLAGADAVLTKFSSPELTKCLVVAAQ 293