Pairwise Alignments

Query, 314 a.a., chemotaxis protein CheV from Vibrio cholerae E7946 ATCC 55056

Subject, 1186 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score = 56.2 bits (134), Expect = 4e-12
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 183  GRTILIVDDSSTARNQVKDTLSQLGLNIIECHDGLQALNLLKSWCDEGKDIYSELLMMIT 242
            GRT L+VDD       +   L   GL ++   DG +AL+ L+S  D          +++ 
Sbjct: 1058 GRTALLVDDDMRNAFALSKVLRARGLKVLIAQDGAKALSQLQSRADVD--------LVLM 1109

Query: 243  DAEMPEMDGYKLTYEIRNDPRMKDLFITLNTSLSGSFNEAMVQKVGCNRFISKFQPDLLV 302
            D  MP MDGY+   EIR DPR   L I   T+ + + +       G + +++K       
Sbjct: 1110 DIMMPGMDGYQTMGEIRKDPRFAHLPIIALTAKAMAGDRDRCLAAGADDYLTK------- 1162

Query: 303  QVAQERLREVLS 314
             V  ERLR+V++
Sbjct: 1163 PVDVERLRQVMA 1174



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 182 DGRTILIVDDSSTARNQVKDTLSQLGLNIIECHDGLQALNLLKSWCDEGKDIYSELLMMI 241
           +G+ +L+++D    R  V D     G       DG   L L +     G         ++
Sbjct: 789 EGKLLLVIEDDPIFRRVVCDMAQAKGFATATAGDGKTGLELARLRRPSG---------VV 839

Query: 242 TDAEMPEMDGYKLTYEIRNDPRMKDL 267
            D  +P+M G+++   ++  P  +D+
Sbjct: 840 LDIGLPDMSGWEVIEALKLQPETRDI 865



 Score = 26.2 bits (56), Expect = 0.004
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 158 LAEIVHYDASISKEVLD---ESLLN--HMDGRT-ILIVDDSSTARNQVKDTLSQLGLNII 211
           L  + H    +S+E ++   E LL     DGR  +L+VD    +R  + +TL  L L+I 
Sbjct: 882 LGTVGHLTKPVSREQINGAFEVLLRARRADGRRRLLLVDGDEASRATIGETLVGLDLDIT 941

Query: 212 ECHDGLQALNLL 223
               G  AL  L
Sbjct: 942 VAETGQVALEHL 953