Pairwise Alignments

Query, 616 a.a., signal peptide peptidase SppA from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., Periplasmic serine proteases (ClpP class) from Variovorax sp. SCN45

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 22/235 (9%)

Query: 318 PTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKAVVLRVDSPGGS 377
           P+T       AVV   G I +G    G    + V   ++ A  D   K V+L ++SPGGS
Sbjct: 80  PSTAKTTAHTAVVEIKGEIANG----GDASAEFVVAAMKTAFEDEGAKGVILLINSPGGS 135

Query: 378 AFASEVIRNEIEALKAA-GKPVVVSMSSLAASGGYWISMSADKIVAQPTTLTGSIGI--- 433
              + +I +EI+ LKA   KP+   +    AS  Y+I+ + DKI     ++ GSIG+   
Sbjct: 136 PVQAGIINDEIKRLKAKYKKPIYAVVEETCASAAYYIAAATDKIYVDKASIVGSIGVLMD 195

Query: 434 -FSVITTFEKGLNNLGIYTDGVG---TTPFSGQGLTTGLTQGAKDAIQLGIEHGYQRFIS 489
            F      EK      + T G       PFS       ++   +   Q  +   + +FI+
Sbjct: 196 GFGFTGVMEKVGVERRLLTAGENKGFLDPFS------PMSDAQRAHAQTMLNQIHAQFIN 249

Query: 490 LVAEKRGLTLKA-VDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLAADLAQLDQ 543
           +V   RG  LK     L  G  W+ + A   GL DQLG+ D   ++A ++ + D+
Sbjct: 250 VVKTGRGDRLKLDTPGLFSGLFWSGEQAVEYGLADQLGNVD---YVAREVIKADE 301



 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 17/216 (7%)

Query: 97  IVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEFKAS-GKPVFAV-GDFYNQ 154
           +V  ++ A  D    G++L +   P  +  +   I   I   KA   KP++AV  +    
Sbjct: 109 VVAAMKTAFEDEGAKGVILLINS-PGGSPVQAGIINDEIKRLKAKYKKPIYAVVEETCAS 167

Query: 155 SQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPFVR 214
           + YY+A+  DKIY+     V   G       +  ++EK+ V   +   G  K  ++PF  
Sbjct: 168 AAYYIAAATDKIYVDKASIVGSIGVLMDGFGFTGVMEKVGVERRLLTAGENKGFLDPF-- 225

Query: 215 DDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKTLTPSM--------EQFVAQ-LKEV 265
             MSDA R  A   L Q+ + +++ V   R   +K  TP +        EQ V   L + 
Sbjct: 226 SPMSDAQRAHAQTMLNQIHAQFINVVKTGRGDRLKLDTPGLFSGLFWSGEQAVEYGLADQ 285

Query: 266 NGDLAALSKKVGLVDEL---ATRQQVRQTLAETFGS 298
            G++  ++++V   DE+     R  V + LA+ FG+
Sbjct: 286 LGNVDYVAREVIKADEVIDYTRRDNVAEKLAKKFGA 321