Pairwise Alignments

Query, 616 a.a., signal peptide peptidase SppA from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Periplasmic serine proteases (ClpP class) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 96.3 bits (238), Expect = 2e-24
 Identities = 77/234 (32%), Positives = 106/234 (45%), Gaps = 20/234 (8%)

Query: 304 YNAIGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSN 363
           + AI ++ Y +    TT       AVV   G I  G++       + V   LR A  D  
Sbjct: 56  FGAIAWFVYNSNT--TTTVSTPHTAVVDIKGEIASGAE----ASAEYVVASLRSAFEDEG 109

Query: 364 VKAVVLRVDSPGGSAFASEVIRNEIEALKAA-GKPVVVSMSSLAASGGYWISMSADKIVA 422
            +AVVL ++SPGGS   + +I +EI  LK   GK V   +    AS  Y+I+ +AD I  
Sbjct: 110 AQAVVLLINSPGGSPVQAGIINDEITRLKGLHGKKVYAVVEETCASAAYYIAAAADDIYV 169

Query: 423 QPTTLTGSIGIFSVITTFEKGLNNLGI----YTDGVGTT---PFSGQGLTTGLTQGAKDA 475
              +L GSIG+      F   ++ LGI     T G       PFS Q       +  K  
Sbjct: 170 DKASLVGSIGVLMDGFGFTGLMDKLGIERRLMTAGANKAMLDPFSPQD------EAQKAY 223

Query: 476 IQLGIEHGYQRFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFD 529
           IQ  +   + +FI +V + RG  LK   +   G VW  Q A  LGL D LG+ D
Sbjct: 224 IQAMLGEIHAQFIGVVKKGRGDRLKENGDTFSGLVWNGQQAVALGLADGLGNLD 277



 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 16/215 (7%)

Query: 97  IVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEFKA-SGKPVFAV-GDFYNQ 154
           +V +LR A  D     +VL +   P  +  +   I   I   K   GK V+AV  +    
Sbjct: 97  VVASLRSAFEDEGAQAVVLLINS-PGGSPVQAGIINDEITRLKGLHGKKVYAVVEETCAS 155

Query: 155 SQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPFVR 214
           + YY+A+ AD IY+     V   G       +  L++KL +   +   G  K+ ++PF  
Sbjct: 156 AAYYIAAAADDIYVDKASLVGSIGVLMDGFGFTGLMDKLGIERRLMTAGANKAMLDPFSP 215

Query: 215 DDMSDAARESASRWLTQLWSAYVDDVAANRQIEIKT-------LTPSMEQFVA-QLKEVN 266
            D  +A +      L ++ + ++  V   R   +K        L  + +Q VA  L +  
Sbjct: 216 QD--EAQKAYIQAMLGEIHAQFIGVVKKGRGDRLKENGDTFSGLVWNGQQAVALGLADGL 273

Query: 267 GDLAALSKKVGLVDEL---ATRQQVRQTLAETFGS 298
           G+L  +++++   +E+     R+ V   LA+ FG+
Sbjct: 274 GNLDYVAREIVKAEEIVDYTRRENVGLRLAKRFGA 308