Pairwise Alignments

Query, 616 a.a., signal peptide peptidase SppA from Vibrio cholerae E7946 ATCC 55056

Subject, 618 a.a., protease IV (signal peptide peptidase) from Escherichia coli BL21

 Score =  540 bits (1392), Expect = e-158
 Identities = 294/619 (47%), Positives = 410/619 (66%), Gaps = 11/619 (1%)

Query: 1   MKSLFRFVGLILKGIWKAITFIRLALTNL--IFLLSIGIIYFIYVHADAPLPTMDKSSAL 58
           M++L+RF+    K  W+ + F+R  + NL  IFL+ +G+  ++ V       T  +  AL
Sbjct: 1   MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRG-AL 59

Query: 59  VLNLSGPIVEQSTHINPMDSFTGSVFGEELPR--ENVLFDIVETLRHAKNDNNVTGLVLA 116
           +L++SG IV++          +  + G    R  EN LFDIV T+R AK+D N+TG+V+ 
Sbjct: 60  LLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMD 119

Query: 117 LGDMPETNLTKLRYIAKAINEFKASGKPVFAVGDFYNQSQYYLASYADKIYLAPDGAVLL 176
           L +    +   ++YI KA+ EF+ SGKPV+AVG+ Y+Q QYYLAS+A+KI+L+P G V L
Sbjct: 120 LKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDL 179

Query: 177 KGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPFVRDDMSDAARESASRWLTQLWSAY 236
            G++   +YYK+LL+KL V+THVFRVGTYKSA+EPF+RDDMS AARE+ SRW+ +LW  Y
Sbjct: 180 HGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNY 239

Query: 237 VDDVAANRQIEIKTLTPSMEQFVAQLKEVNGDLAALSKKVGLVDELATRQQVRQTLAETF 296
           ++ VAANRQI  + + P  +  +  L +  GD A  + +  LVD LA+  ++ + L + F
Sbjct: 240 LNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEF 299

Query: 297 GSDGKD-SYNAIGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLL 355
           G    D +Y AI YY+Y       T    + I VV A+GAIMDG + +G VGGDT A  +
Sbjct: 300 GWSKTDKNYRAISYYDYALKTPADT---GDSIGVVFANGAIMDGEETQGNVGGDTTAAQI 356

Query: 356 REARNDSNVKAVVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISM 415
           R+AR D  VKA+VLRV+SPGGS  ASEVIR E+ A +AAGKPVVVSM  +AASGGYWIS 
Sbjct: 357 RDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWIST 416

Query: 416 SADKIVAQPTTLTGSIGIFSVITTFEKGLNNLGIYTDGVGTTPFSGQGLTTGLTQGAKDA 475
            A+ IVA P+TLTGSIGIF VITT E  L+++G++TDGV T+P +   +T  L   A+  
Sbjct: 417 PANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLM 476

Query: 476 IQLGIEHGYQRFISLVAEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAVHLA 535
           +QL IE+GY+RFI+LVA+ R  T + +D++AQG VWT QDA+  GLVD LGDFDDAV  A
Sbjct: 477 MQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA 536

Query: 536 ADLAQLDQYNL-YWVEEPLTPAQQFLQDLLGQVRVSLGLDVSTLLPKSLQPLAVEWQQQT 594
           A+LA++ Q++L Y+V+EP T   + + ++ G VR  L      +LP  L  +A   + ++
Sbjct: 537 AELAKVKQWHLEYYVDEP-TFFDKVMDNMSGSVRAMLPDAFQAMLPAPLASVASTVKSES 595

Query: 595 SLLNQLNDPKGQYAFCLPC 613
             L   NDP+ +YAFCL C
Sbjct: 596 DKLAAFNDPQNRYAFCLTC 614