Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 751 a.a., ATP-dependent DNA helicase from Pseudomonas simiae WCS417

 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 130/616 (21%), Positives = 227/616 (36%), Gaps = 93/616 (15%)

Query: 18  GFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPALLSGKKVIISTGSKNLQ 77
           GF+P Q    +A++V  A++    L+ +A TG GKT   + P L            K L 
Sbjct: 182 GFRPGQRS--LAESVYKAVSTGRCLMAQAPTGIGKTIGTIFPLL------------KALA 227

Query: 78  EQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTPESDPTLLTQLV--- 134
            Q   +           F   A   GR   L LD  + Q++ + +P+  P  + +LV   
Sbjct: 228 PQRLDK----------LFFLTAKTPGRK--LALD--AAQVLHASSPDQ-PLRVLELVARD 272

Query: 135 KVRSWASSTQSGDL-----GECDDLAEDSPIIPTITSTNDNCLGKECASYQDCFVSKARR 189
           K          GD      G  D L         +   +   L     ++  C    ++ 
Sbjct: 273 KACEHLDKACHGDACPLAKGFYDRLPAARIAAAKVRLLDQRNLRDVALAHDVCPYYLSQE 332

Query: 190 RAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQYFGQSVSSRQ 249
            A  AD+VV +++ +  D      G  +L       + DEAH L + A   +  S+    
Sbjct: 333 MARWADLVVADYNYYF-DFGAMLFGLAQLNQWRAAVLVDEAHNLVERARSMYSASLDQYH 391

Query: 250 VQDLAKDIELGYRTEAKDMRQ-LQKVSDKLVQAAMDLRIVLGEPGYRGNWREVLKVPTVA 308
           ++ L +       T  + ++Q LQ+++        D               ++       
Sbjct: 392 LKTLRE-------TAPEPLKQPLQRLNRAWNALHKD---------------QLAPYQAYT 429

Query: 309 REVERLNEALQFALDVL-KLALGRSQLLDTAFERATLILGRIRRVCDVSVTGYSYWYDTT 367
              E+L +AL      + +      + L    +R    + +  +V ++      + +D +
Sbjct: 430 ARPEKLLQALSLCASAMGEYFNDHPESLSGDLQRFYFEVLQFGKVAELF--NEHFIFDIS 487

Query: 368 PRHFS-------LHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGL-TP 419
            R  +       L +  +  A+  R ++     + +F SATL+      ++ + LGL   
Sbjct: 488 KRQLNGKRSSSTLCLRNVVPAEFIRPRLTAARSSVLF-SATLSPRH---YYADLLGLPAD 543

Query: 420 SAQFSLVSPFDYQQQAVLCVPRYLPE-PNSSGLAEKLVRMLAPVIEHNQGRCFFLCTSHS 478
           +A   + SPF  +Q  V  V        +     E +V ++A       G      +S  
Sbjct: 544 TAWIDVESPFKAEQLHVRIVDEISTRFVHRHASLEPIVELIARQYTQQPGNYLAFFSSFD 603

Query: 479 MMRDLGERFRERLTLPVLMQ-----GETSKQKTLAEFME--LGNALLVATGAFWEGIDVR 531
            ++ + +   E+     L Q      E  +Q  L +F E   G    V  GAF EGID+ 
Sbjct: 604 YLQQVAQLLAEKHPTITLWQQSRGMAEAERQAFLDQFTEHSQGIGFAVLGGAFGEGIDLP 663

Query: 532 GDTLSCVIIDKLPFTAPDDPLLKARIEDCRLRGGDPFAQ----VQLPEAVITLKQGVGRL 587
           G  L    I  L       P L    E  +LR G  F        L   +  + Q  GR+
Sbjct: 664 GARLIGAFIATLGL-----PQLNPVNEQMKLRMGAIFGAGYDYTYLYPGIQKVVQAAGRV 718

Query: 588 IRDKNDKGALIICDNR 603
           IR + D+G +++ D+R
Sbjct: 719 IRSQQDQGVVMLIDDR 734