Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., putative Helicase from Pseudomonas putida KT2440

 Score =  224 bits (571), Expect = 1e-62
 Identities = 192/659 (29%), Positives = 292/659 (44%), Gaps = 83/659 (12%)

Query: 42  LVVEAGTGTGKTFAYLVPAL----LSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQ 97
           + VEAGTGTGKT AY + A+     +GK+++I+T +  LQEQ+  +DLP ++ + G    
Sbjct: 58  VAVEAGTGTGKTVAYSLAAIPAAKAAGKRLVIATATVALQEQIVFKDLPDLMRSSGLNFS 117

Query: 98  VALLKGRANYLCLDRLSRQMVESHTPESDPTLLTQL---------------VKVRSWASS 142
            AL KGR  YLCL +L   + E H   +   L  +                  +   A +
Sbjct: 118 FALAKGRGRYLCLSKLDILLQEGHAQSATAQLFEEEGFRIEVDERSQKLFNSMIEKLAGN 177

Query: 143 TQSGDLGECDDLAEDSPIIPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVVNHH 202
              GD     +  ED      +T+ +  C G+ C ++Q C   KAR      DV+V NH 
Sbjct: 178 RWDGDRDSWPEALEDQDWA-RLTTDHSQCTGRHCPNFQQCVFYKAREGMGKVDVIVTNHD 236

Query: 203 LFLADLAIKETGFGELIPEAE--VFIFDEAHQLPDIASQYFGQSVSSRQVQD----LAKD 256
           + LADLA+   G G ++P+    +++FDE H LPD A  +F      R   D     AK+
Sbjct: 237 MVLADLAL---GGGAVLPDPRDTMYVFDEGHHLPDKAIGHFAHYSRLRSTADWLEQTAKN 293

Query: 257 I-----------ELGYRTE-----AKDMRQLQKVSDKLVQAAMDLRIVLGEPGY-RGNWR 299
           +           +LG   E     A+++R  Q+    L +   D R      G  R  +R
Sbjct: 294 LTKLLAQHPLPGDLGKYIEQVPELAREVRTQQQFMFTLCEQVADFRPSEDTEGRERPRYR 353

Query: 300 -EVLKVPTVAREV--------ERLNEALQFALDVLKLALGRSQLLDTAFERATLILGRIR 350
            E   VP   REV         RLN+      D+LK  +     +  A  +A        
Sbjct: 354 FEGGVVPEQIREVGIELKKGFARLNDLFTRLADLLKEGMDGEVNIGIASHQAEEWYPLFG 413

Query: 351 RVCDVSVTGYSYWY--------DTTPR-------------HFSLHITPLSVADKFREQIA 389
            +   +   +  W         D+ P                 ++ +P+  AD  R  + 
Sbjct: 414 SLVTRAQGNWELWTAFTAEDPEDSPPMARWLTLAESGALFDIEVNASPILAADMLRRSLW 473

Query: 390 LKEGAWIFTSATLAVNEDFSHFTERLGLTPSAQFSLV-SPFDYQQQAVLCVPRYLPEPNS 448
                 + TSATL     F  F  R GL   A   +V SPF +    +L VP    +P  
Sbjct: 474 SVAHGALVTSATLTALGKFDRFRMRSGLPRDAVTCVVPSPFVHGDAGLLRVPDLQADPRD 533

Query: 449 SGL-AEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFRERLTLPVLMQGETSKQKTL 507
           +      ++R L  ++E  +G    L +S   M+D+ +         VL+QG  SKQ+TL
Sbjct: 534 AAAHTAAIIRELPNIVEDARG-ALVLFSSRKQMQDVFDGLDRDWRKLVLIQGNLSKQETL 592

Query: 508 ----AEFMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAPDDPLLKARIEDCRLR 563
               A   +  +++L    +F EG+D+ G     V+I K+PF  PDDP+  A  E    R
Sbjct: 593 NKHKARVDDGQHSVLFGLASFAEGVDLPGAYCEHVVIAKIPFAVPDDPVEAALAEWIEAR 652

Query: 564 GGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRDYGGVFLASLPPIPR 622
           GG+PF ++ +P+A + L Q  GRL+R + D+G + + D RLVT+ YG   L +LPP  R
Sbjct: 653 GGNPFMEIAVPDASLKLIQACGRLLRTEQDRGVITLLDRRLVTQRYGKAILNALPPFRR 711