Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 777 a.a., ATP-dependent helicase DinG/Rad3 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  181 bits (459), Expect = 1e-49
 Identities = 204/742 (27%), Positives = 309/742 (41%), Gaps = 135/742 (18%)

Query: 17  PGFQPRQAQVDMAKAVA----------SAIANQSQL------VVEAGTGTGKTFAY---L 57
           PG++ R  Q +MA  +A           A+A+ + L      VV+AGTG GK+ AY   +
Sbjct: 42  PGYRARPGQREMAAHIAHTLSGVSLGDGAVASDAALPARGIAVVQAGTGVGKSAAYASTV 101

Query: 58  VP-ALLSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLC---LDRL 113
           +P AL   K+VIIST +  LQEQL  +DLP + ++L      AL KGR  Y+C   LD+L
Sbjct: 102 IPLALAQQKRVIISTATVALQEQLIAKDLPALAASLPQPFSFALAKGRGRYVCRLKLDQL 161

Query: 114 S------RQMVESHTPESDPTLLTQL------------------VKVRSWASSTQSGDL- 148
           S        + ES    +  T    +                  V+  +WA +   G   
Sbjct: 162 SGGDAASADLFESDDGSASDTSAAGVAAQAVASAAAAARWQERGVQYTAWADALDDGSWD 221

Query: 149 GECD--DLAEDSPIIPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVVNHHLFLA 206
           G+ D  D   D  +   + +    C  + C SY  C   +AR R   A V+VVNH L L+
Sbjct: 222 GDRDRLDTPPDGGLWGPVAAERHTCTARHCPSYNSCSYYQARARLAQAQVIVVNHDLLLS 281

Query: 207 DLAIKETGFGELIPEAEVFIFDEAHQLPDIASQYFGQSVS----------SRQVQDLAKD 256
            L +         P+    +FDEAH L  +A   F  S+            R V ++A  
Sbjct: 282 TLGLHALP----APQDCYLVFDEAHHLGSVAQGQFTASMDLMRGHWLDKLPRAVDEVATA 337

Query: 257 IELGYRTE-AKDMRQLQKVSDKLVQAAM----------DL--RIVLGEPGYRGN------ 297
           I+     + A   ++L+    +L + AM          DL  R     P   G       
Sbjct: 338 IDHRPTIDVAAFTKELKSAQTELARLAMQRIGSLPAWLDLTGRSAGRSPARPGGGAFNEA 397

Query: 298 ----------------WREVL-KVPTVAREVERLNEALQFAL---------DVLKLALGR 331
                           W EV+ K+   A  + ++ EAL   L         D  + A   
Sbjct: 398 GAPVVDRFEGGVLPAEWLEVVGKLHANASSLLKVFEALAAQLKANARENPGDAARFAKLY 457

Query: 332 SQL--LDTAFERATLILGRIRRVCDVSVTGYSYWYDTTPRH----FSLHITPLSVADKFR 385
           S+L  L    + A       ++V        + W +    H     + H  PL      R
Sbjct: 458 SRLGVLAPRLQSAQETASYWQQVAGDGQPPLAKWLEAGVSHGLVTLTAHACPLQPGSLLR 517

Query: 386 EQIALKEGAWIFTSATLAVNEDFSHFTERLGLT---PSAQFSLVSPFDYQQQAVLCVPRY 442
             +  +  A + TSA+L     F HF    GL      A   + SPFD+ +Q  L V + 
Sbjct: 518 NHLWNQVRAAVVTSASLTTCGTFDHFLHESGLAWDGAVAAREVQSPFDHARQGRLVVVQT 577

Query: 443 LPEPNS-SGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMMR------DLGER--FRERLTL 493
             +P    G   +++ +L   +   +     L TS + MR      + GE    R+R   
Sbjct: 578 TADPKDVDGYTREMLALLMADLREVERGALVLFTSRAQMRQAQGLLERGEHGALRDR--- 634

Query: 494 PVLMQGETSKQKTL---AEFMELGN-ALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAPD 549
            VL+QGE S+   L   AE +  G  ++L    +F EG+D+ G+    V I KLPF +P 
Sbjct: 635 -VLVQGEASRTVLLRRHAERVAEGKPSVLFGLQSFGEGLDLPGELCEWVFITKLPFASPS 693

Query: 550 DPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRDY 609
           DP+ +AR +  + +G DPF+++ +P     L Q  GR +R + D+  ++  D RL+ + Y
Sbjct: 694 DPVGQARADWLKSQGRDPFSELVVPATGARLLQWTGRALRTEADEAVVVCYDARLLRQSY 753

Query: 610 GGVFLASLPPIPRTRDLDVVTT 631
           G   L  LPP    R +D V T
Sbjct: 754 GRRMLKGLPPYRLQRRVDGVLT 775