Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., ATP-dependent helicase DinG/Rad3 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  164 bits (415), Expect = 1e-44
 Identities = 177/683 (25%), Positives = 283/683 (41%), Gaps = 80/683 (11%)

Query: 11  ALGQAIPGFQPRQAQVDMAKAVASAIANQS--QLVVEAGTGTGKTFAYLVPALLSG---- 64
           AL   IP F PR  Q  M   VA  +A +    L +EA TG GKT +YL+P +       
Sbjct: 17  ALQDQIPDFIPRAPQRQMIADVARTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76

Query: 65  KKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTPE 124
           K +++ST +  LQ+Q+F +DLPL+   +      A   GR  Y+C   L+       T +
Sbjct: 77  KTLVVSTANVALQDQIFSKDLPLLRKIIPDLRFTAAF-GRGRYVCPRNLAALASSEPTQQ 135

Query: 125 SDPTLLTQLVKVRSWASSTQSGDL-GECD-----------DLAEDSPIIPTITSTNDNCL 172
                L   +   +     +   L G+ D           D+A D  +   +++   +CL
Sbjct: 136 DLLAFLDDELTPNNQEEQKRCARLKGDLDGYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195

Query: 173 GKECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAE--VFIFDEA 230
            + C  Y++C    ARR   +A+VVV NH L +A +  +      ++PE +  + + DE 
Sbjct: 196 NRNCHYYRECPFFVARREIQEAEVVVANHALVMAAMESE-----AVLPEPKHLLLVLDEG 250

Query: 231 HQLPDIASQYFGQSVS-------------SRQVQDLAKDIELGYRTEAKDMRQLQKVSDK 277
           H LPD+A      S               S+ V    +           +  +L    ++
Sbjct: 251 HHLPDVARDALEMSAEITASWYRLQLDLFSKLVATCMEQFRPKTTPPLANPERLNAHCEE 310

Query: 278 LVQAAMDLRIVLG-------EPGYRGNWREVL-KVPTVAREVERLNEAL----QFALDVL 325
           + +    L  +L        E  +R    E+  +V  + + + +L E L    +  L+ L
Sbjct: 311 VYELIASLNAILNLYMPAAQEAEHRFAMGELPDEVMEICQRLAKLTETLRGLAESFLNDL 370

Query: 326 KLALGRSQL--LDTAFERATLILG---------RIRRVCDVSVTGYSYWYDTTPRHFSLH 374
               G   +  L     +    LG         R+  +   S    S W     R   LH
Sbjct: 371 SEKTGSHDIVRLHRVILQMNRALGMFEAQSKLWRLASMAQSSGAPVSKWATREIREGQLH 430

Query: 375 I----TPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPSAQ---FSLVS 427
           +      + V+D+    +       I TSATL     FS   E  GL   A     +L S
Sbjct: 431 VWFHCVGIRVSDQLERLLWRSVPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490

Query: 428 PFDYQQQAVLCVPRYLPEPNSSGLAEKLVRMLAPVIEH-----NQGRCFFLCTSHSMMRD 482
           PF++ +Q  L +P+   EP      + +  M A   E      + G      +  +M R 
Sbjct: 491 PFNHVEQGKLVIPQMRYEPTIDNEEQHIAEMAAYFREQLESKKHHGMLVLFASGRAMQRF 550

Query: 483 LGERFRERLTLPVLMQGETSKQKTL---AEFMELG-NALLVATGAFWEGIDVRGDTLSCV 538
           L      RL L  L+QG+  + + +    + +E G  ++LV   +F EG+D++G+ L+ V
Sbjct: 551 LEHVADVRLLL--LVQGDQPRYRLVELHRKRVESGERSVLVGLQSFAEGLDLKGELLTQV 608

Query: 539 IIDKLPFTAPDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALI 598
            I K+ F   D P++    E  +     PF    LP A   L Q VGRLIR    +G ++
Sbjct: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHACRGEVV 668

Query: 599 ICDNRLVTRDYGGVFLASLPPIP 621
           I D RL+T++YG   L +LP  P
Sbjct: 669 IYDKRLLTKNYGQRLLNALPVFP 691