Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., Rad3-related DNA helicases from Kangiella aquimarina DSM 16071

 Score =  535 bits (1378), Expect = e-156
 Identities = 296/651 (45%), Positives = 412/651 (63%), Gaps = 23/651 (3%)

Query: 2   IEKTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPAL 61
           +E+ FS  G L     GF  R  Q  MA+++ SAI +++ + +EAGTGTGKTFAYLVPAL
Sbjct: 7   LEELFSADGLLADYFEGFVRRSEQEQMAQSIESAIHDETSICIEAGTGTGKTFAYLVPAL 66

Query: 62  LS----GKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQM 117
            S      K+I+STG+KNLQ+QL+ RDLP +  AL    ++ALLKGR NYLC  RL +Q 
Sbjct: 67  KSWYEQDTKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYLCQYRL-QQS 125

Query: 118 VESHTPESDPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSPIIPTITSTNDNCLGKECA 177
           +ES   +S  +++  L +V  W+  T SGDL +C DLA++ P+   +TSTN+NCLG EC 
Sbjct: 126 LESGRFQSR-SMVDTLSRVNDWSVQTSSGDLTQCTDLADNDPLWSYVTSTNENCLGSECP 184

Query: 178 SYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIA 237
            Y +CFV+KAR+RA+ ADVVVVNHHL LAD+ +KE GFGEL+P+A++ + DEAHQL DIA
Sbjct: 185 DYAECFVAKARQRAVTADVVVVNHHLLLADMVLKEDGFGELLPDADIVVVDEAHQLADIA 244

Query: 238 SQYFGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGN 297
             ++G+ ++SRQ+ ++ +D EL   T AKD RQL     ++  A  ++R+ LGE G + N
Sbjct: 245 HSFYGRRLTSRQLMEICRDTELEALTNAKDDRQLSVAVRRVEGAVNEIRLSLGESGQKKN 304

Query: 298 WREVLKVPTVAREVERLNEALQFALDVLKLALGRSQLLDTAFERATLILGRIRRVC--DV 355
           W++++  P   +    L + L      L+    RS+ LD+  +RA   L  +      D 
Sbjct: 305 WQQIVN-PQRKQLFAELKKELSALHSRLERHASRSKGLDSCHKRAEECLHTLAFFSDKDQ 363

Query: 356 SVTGYSYWYDTTPRHFSLHITPLSVADKF----REQIALKEGAWIFTSATLAV-----NE 406
            +T    W +T  + F++  TPL V+  F    REQ       W+FTSAT+         
Sbjct: 364 ELTAVR-WVETYRQGFAVLETPLDVSQAFAQSCREQ---STRTWVFTSATITQASSKGTS 419

Query: 407 DFSHFTERLGLTPSAQFSLVSPFDYQQQAVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHN 466
           DF HF ERLGL  +    L SPFDY  QA+L +PR L +P S        + + P++E N
Sbjct: 420 DFKHFKERLGLDEARDLELPSPFDYDAQALLHIPRGLADPRSKDFINSWQQAVLPIVEAN 479

Query: 467 QGRCFFLCTSHSMMRDLGERFRER-LTLPVLMQGETSKQKTLAEFMELGNALLVATGAFW 525
            G  F L TS+S M  + E ++++ L   VLMQGE  K + + +F E GNA+L+AT +FW
Sbjct: 480 PGGTFVLFTSYSAMHQVQELWKDKLLDKTVLMQGEKPKNQLIEDFRETGNAVLLATSSFW 539

Query: 526 EGIDVRGDTLSCVIIDKLPFTAPDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVG 585
           EG+DV+G  LSCVIIDKLPF APD+PL++A+I+  R  G +PF  +Q+PEA+I LKQG G
Sbjct: 540 EGVDVKGLALSCVIIDKLPFAAPDEPLIEAKIQAMRKSGKNPFFDLQIPEAIIALKQGAG 599

Query: 586 RLIRDKNDKGALIICDNRLVTRDYGGVFLASLPPIPRTRDLDVVTTFLQQL 636
           RLIRD+ D+G L++CD RL+   YG  FL SLPP+ RTR+   V  FL+ L
Sbjct: 600 RLIRDQTDRGVLVLCDPRLIANAYGKRFLRSLPPMRRTREQKTVIEFLKNL 650