Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 725 a.a., Rad3-related DNA helicases from Enterobacter asburiae PDN3

 Score = 97.8 bits (242), Expect = 1e-24
 Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 30/249 (12%)

Query: 11  ALGQAIPGFQPRQAQVDMAKAVASAIANQS--QLVVEAGTGTGKTFAYLVPALL----SG 64
           AL Q IP F PR  Q  M   VA  +A      L +EA TG GKT +YL+P +       
Sbjct: 17  ALQQQIPDFIPRAPQRQMIADVAKTLAGDDGRHLAIEAPTGVGKTLSYLIPGIAIAREED 76

Query: 65  KKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTPE 124
           K +++ST +  LQ+Q+F +DLPL+   +      A   GR  Y+C   L+   + S  P 
Sbjct: 77  KTLVVSTANVALQDQIFSKDLPLLRKIIPDLRFTAAF-GRGRYVCPRNLAA--LASSEPN 133

Query: 125 SDPTLL--------------TQLVKVRSWASSTQSGDLGECDDLAEDSPIIPTITSTNDN 170
               L                Q  K+++     +   L +    A    +   +++   +
Sbjct: 134 QQDLLAFLDDELTPNNKAEQEQCAKLKAELDGYKWDGLRDHTSQAISDDLWRRLSTDKAS 193

Query: 171 CLGKECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAE--VFIFD 228
           CL + C  Y++C    ARR   +A+VVV NH L +A L  +      ++PE +  + + D
Sbjct: 194 CLNRNCHYYRECPFFVARREIQEAEVVVANHALVMAALESE-----AVLPEPKNLLLVLD 248

Query: 229 EAHQLPDIA 237
           E H LPD+A
Sbjct: 249 EGHHLPDVA 257



 Score = 95.1 bits (235), Expect = 1e-23
 Identities = 84/266 (31%), Positives = 125/266 (46%), Gaps = 18/266 (6%)

Query: 370 HFSLHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPSAQ---FSLV 426
           H   H   + VAD+  + I       + TSATL     FS   E  GL   A     +L 
Sbjct: 430 HLFFHCVGIRVADQLEKLIWRSVPHVVVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489

Query: 427 SPFDYQQQAVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHNQGRCF----FLCTSHSMMRD 482
           SPF++ +Q  L +PR   EP      + +  M A   E  + + +     L  S   M  
Sbjct: 490 SPFNHCEQGKLVIPRMKFEPLIDNEEQHIAEMAAYFREQVESKKYPGMLVLFASGRAM-- 547

Query: 483 LGERFRERLT---LPVLMQGETSKQK---TLAEFMELGN-ALLVATGAFWEGIDVRGDTL 535
             +RF E +T   L +L+QG+  + +   T  + ++ G  ++LV   +F EG+D++GD L
Sbjct: 548 --QRFLEHVTDLRLLLLVQGDQPRYRLVETHRKRIDNGERSVLVGLQSFAEGLDLKGDYL 605

Query: 536 SCVIIDKLPFTAPDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKG 595
           + V I K+ F   D P++    E  +     PF    LP A   L Q VGRLIR     G
Sbjct: 606 TQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPAASFNLIQQVGRLIRSHGCWG 665

Query: 596 ALIICDNRLVTRDYGGVFLASLPPIP 621
            ++I D RL+T++YG   L +LP  P
Sbjct: 666 EVVIYDKRLLTKNYGQRLLNALPIFP 691