Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 921 a.a., 3'-5' exonuclease DinG from Azospirillum sp. SherDot2

 Score =  107 bits (268), Expect = 2e-27
 Identities = 79/252 (31%), Positives = 119/252 (47%), Gaps = 23/252 (9%)

Query: 20  QPRQAQVDMAKAVASAIANQ------SQLVVEAGTGTGKTFAYLVPALL----SGKKVII 69
           +PR  Q D + AV++A A +      + ++ EAGTG GKT  YL PA +    +G  V I
Sbjct: 218 EPRPQQADYSSAVSAAFAPRQLPDTPNVVLAEAGTGVGKTLGYLAPATVWAEKNGGTVWI 277

Query: 70  STGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTPESDPTL 129
           ST ++NLQ Q+      L         +V L KGR NYLCL  L   +         P  
Sbjct: 278 STYTRNLQHQIDAELDRLYADPATKARKVVLRKGRENYLCLLNLEEAV---RAMPFQPHN 334

Query: 130 LTQLVKVRSWASSTQSGDLGECD------DLAEDSPIIPTITSTNDNCLGKECASYQDCF 183
              +  +  WA++T+ GD+   D      D+A   P +  +      C+   C  Y  C+
Sbjct: 335 AIGVGLMARWAAATRDGDMTGGDFPGWLVDIAGRGPTMG-LADRRGECIYSACDHYARCY 393

Query: 184 VSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQYFGQ 243
           + K+ RRA  AD+V+ NH L +   A+   G GE       ++FDE H + D A   F  
Sbjct: 394 IEKSVRRARRADIVIANHALVMVQAAL---GGGEEPTLPSRYVFDEGHHVFDAADSAFAG 450

Query: 244 SVSSRQVQDLAK 255
            ++ R+ Q+L +
Sbjct: 451 HLTCRETQELRR 462



 Score = 59.7 bits (143), Expect = 6e-13
 Identities = 76/277 (27%), Positives = 122/277 (44%), Gaps = 46/277 (16%)

Query: 354 DVSVTGYSYWYDTTPRHFSLHITPLSVADKFREQIALKEGAWIFTSATLA-----VNEDF 408
           DV V  Y +W D T                F E +A      + TSATL      + +D+
Sbjct: 649 DVDVGLYRHWVDPTV--------------PFAEALAGPAHGLVVTSATLTDGTGDIGQDW 694

Query: 409 SHFTERLGLT----PSAQFSLVSPFDYQQQAVLCVPRYLPEPNSSGL--AEKLVRMLAPV 462
               +R G +    P+ +  + SPFDY  +  + V   + + +   +  A K + M A  
Sbjct: 695 RAAEDRCGASHLPAPAIRAQVPSPFDYPNRTRVFVVNDVRKDDLGQVSAAYKSLFMAAG- 753

Query: 463 IEHNQGRCFFLCTSHSMMRDLGERFRERL---TLPVLMQG-ETSKQKTLAE-FMELGNAL 517
                G    L T+ S +R + +R  E L    +P+  Q  +     TL + F    +A 
Sbjct: 754 -----GGGLGLFTAISRLRAVRDRIAEPLDQVNIPLYAQHVDPLDVSTLIDIFRNEEHAC 808

Query: 518 LVATGAFWEGIDVRGDTLSCVIIDKLPFTAPDDPLLKARIEDC-RLRGGDPFAQVQLPEA 576
           L+ T A  +G+DV G +L  ++ D++P+  P D L +AR E   R R  D   +++    
Sbjct: 809 LLGTDAVRDGVDVPGRSLRLIVFDRVPWPRP-DILHRARREAFGRRRYEDMITRLR---- 863

Query: 577 VITLKQGVGRLIRDKNDKGALIICDNRLVTRDYGGVF 613
              LKQ  GRL+R  +D G  ++ D  + +R  GG F
Sbjct: 864 ---LKQAFGRLVRRADDTGVFVLLDPMMPSR-LGGAF 896



 Score = 26.6 bits (57), Expect = 0.005
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 411 FTERLGLTPSAQFSLVSPFDYQQQAVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHNQGRC 470
           F  RLG+     F ++  F +   A  CV      P   G+AE L     P  E ++   
Sbjct: 60  FARRLGIDAFPAFDVLELFAFVHPARFCV------PTPRGIAEALD---LPTPEGHEAEA 110

Query: 471 FFLCTS-HSMMRDLGERFRERLTLPVLMQGETSK 503
             L  +   ++ DLG   RE  + PV    E  +
Sbjct: 111 LALQRAVRRLLGDLGAAGREESSDPVAFAWEMGR 144