Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

 Score =  600 bits (1547), Expect = e-176
 Identities = 302/556 (54%), Positives = 405/556 (72%), Gaps = 7/556 (1%)

Query: 2   DKPWLSRYPKDVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRAF 61
           D+PWLS YP+ VP  I+   YPSLV + E+S  KYAD+ A+  MG  +++ + +++S+AF
Sbjct: 3   DRPWLSSYPQGVPADIDASHYPSLVALMEESFSKYADRTAYSFMGKDISYGETDKQSKAF 62

Query: 62  AAYLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDAD 121
           AAYLQ  L L KGDRVA MMPN  QYP+A+  +LRAG+I VNVNPLYTPRELEHQL D+ 
Sbjct: 63  AAYLQG-LGLVKGDRVAAMMPNCPQYPIAVAAILRAGLILVNVNPLYTPRELEHQLKDSG 121

Query: 122 ARAIVIVSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKYDLP 181
           A+AI+I+ NF  TL+Q +A+T +KH+VL S+G  L   KG +V++VV+ VK +VP + LP
Sbjct: 122 AKAIIIMENFGTTLQQCIASTPIKHIVLASMGDRLGFLKGALVNYVVRNVKKLVPHFSLP 181

Query: 182 GAISMRKALHKGRRLQYVKPFMSG-EDIAFLQYTGGTTGVAKGAILTHRNMVANVLQAKG 240
           GA+    AL KG     VKP   G +D+A LQYTGGTTGV+KGA+L HRN++ANVLQ++ 
Sbjct: 182 GAVRFNDALDKGASGS-VKPVAIGPDDVAVLQYTGGTTGVSKGAVLLHRNVIANVLQSEA 240

Query: 241 AYGPVLQE----GRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIPGFVKELQ 296
              P + +     +   V ALPLYH+FA TV  +L +  GG+ +LI NPRDIP  +KEL 
Sbjct: 241 WNEPAMAKVPANEQPTGVCALPLYHIFAFTVGMMLSMRTGGKLILIPNPRDIPAVLKELS 300

Query: 297 KYPFTAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEG 356
           K+   +   VNTLFN L N+ DF+ +++KN+K++VGGGMAVQ AVA+ W + TG  + EG
Sbjct: 301 KHTIHSFPAVNTLFNGLANHPDFNTVNWKNLKISVGGGMAVQAAVAKLWLEKTGCPICEG 360

Query: 357 YGLTECSPLVTGNPYDLTDYTGAIGLPVPSTEVRIVDDAGNVVPNDQVGELQVRGPQVMQ 416
           YGL+E SP  T NP + T YTG IGLP+P T ++++DD GN VP  + GE+ ++GPQVM 
Sbjct: 361 YGLSETSPSTTCNPTNSTAYTGTIGLPLPGTWLKLLDDEGNEVPLGERGEIAIKGPQVMA 420

Query: 417 GYWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVVA 476
           GYWQRP+ T +V+  +G+  +GDI   D++G   +VDRKKDMILVSGFNVYPNE+EDVVA
Sbjct: 421 GYWQRPDETAKVMTPDGYFKSGDIGVVDERGYFKVVDRKKDMILVSGFNVYPNEVEDVVA 480

Query: 477 LHGKVLEVAAIGQANDVSGELVKIYVVKRDPSLTKDEVIAHCRKHLTGYKVPKLVEFRDD 536
           L   VLE AA+G  ++ +GE VK+ +VK+DPSLT+ +V  +CR +LTGYK P++VEFR +
Sbjct: 481 LIPGVLECAAVGVPDEKTGEAVKLVIVKKDPSLTEAQVREYCRANLTGYKQPRIVEFRTE 540

Query: 537 LPKTNVGKILRRVLRE 552
           +PKT VGKILRR LR+
Sbjct: 541 MPKTPVGKILRRELRD 556