Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

 Score =  290 bits (743), Expect = 8e-83
 Identities = 187/569 (32%), Positives = 298/569 (52%), Gaps = 29/569 (5%)

Query: 2   DKPWLSRYPK----DVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEER 57
           D PW   YP     D    + P Q     +M +++V ++ +  A   MG V+T+R+L   
Sbjct: 13  DTPWTHHYPPGMRWDAELPVKPVQ-----QMLDEAVARWPEHSAVEFMGQVITYRQLGAA 67

Query: 58  SRAFAAYLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQL 117
               A  LQ DL +K G  V L +PN   YP+A F VL+AG   VN +PL   R L H++
Sbjct: 68  VERAAKGLQ-DLGVKPGVHVGLYLPNTPHYPIAFFAVLKAGGTVVNYSPLDAERVLAHKI 126

Query: 118 NDADARAIVIVS--NFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMV 175
            D+    ++ +   N    + +++ +++++ +V+ SLG       G   D V   ++G  
Sbjct: 127 EDSRTDILITLDLVNLYPQMARLLDSSRLRKLVVGSLGDY-----GAAGDKVQAQLQGAG 181

Query: 176 PKYDLPGAISMRKA--LHKGRRLQYVKPFMS-GEDIAFLQYTGGTTGVAKGAILTHRNMV 232
               +P      +   L K        P     E+I  LQYTGGTTG+ KGA+LTH N+ 
Sbjct: 182 QIAPVPTDDRHLRFTDLLKSEGTHQTHPLGDLTEEIVVLQYTGGTTGLPKGAMLTHANLT 241

Query: 233 ---ANVLQAKGAYGPVLQEGRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPRDIP 289
              A   ++     P+L EG E  +  LPL+H+FAL+   LL + +G   +L T   D+ 
Sbjct: 242 SASAQYYESTKGDPPILDEGSERFLVVLPLFHIFALSAAMLLGVRLGAALVLHTR-FDVD 300

Query: 290 GFVKELQKYPFTAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTT 349
             + EL     +   GV T++ A++++    E+D +++K    GG  +   V +R+   T
Sbjct: 301 AVMNELAASRISVFPGVPTMYTAILSHPKAKEMDLRSLKFCGSGGAPLPVEVEQRFFALT 360

Query: 350 GVHLLEGYGLTECSPLVTGNPYDLTDYTGAIGLPVPSTEVRIV---DDAGNVVPNDQVGE 406
           G HL EG+G+TE SP+ T  P       G+ G+P+P   +++V   D + +V    + GE
Sbjct: 361 GCHLNEGWGMTETSPVGTFTPARGVRKAGSCGMPLPQVRIKLVSLDDPSKDVTAFGEAGE 420

Query: 407 LQVRGPQVMQGYWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNV 466
           L ++GP VM+GYW  P+AT E +  +G+  +GD+ K D  G  +IVDR KDM+L  G+NV
Sbjct: 421 LCIKGPNVMKGYWNNPKATAESMTPDGYFRSGDVAKMDADGYFYIVDRTKDMLLCGGYNV 480

Query: 467 YPNEIEDVVALHGKVLEVAAIGQANDVSGELVKIYVVKRDPS--LTKDEVIAHCRKHLTG 524
           YP  +E+ V  H  V EV  IG  ++  G+  K +V  ++ +  LT D + A  +  L  
Sbjct: 481 YPRVLEEAVYEHPAVAEVCVIGIPDEYRGQSPKAFVKLKEGAGELTLDALKAFLKDRLGK 540

Query: 525 YKVPKLVEFRDDLPKTNVGKILRRVLREE 553
           +++   +E R +LPKT VGK+ ++ L +E
Sbjct: 541 HEMIGALEIRAELPKTAVGKLSKKDLVDE 569