Pairwise Alignments

Query, 566 a.a., long-chain-fatty-acid--CoA ligase FadD from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Sphingobium sp. HT1-2

 Score =  291 bits (745), Expect = 5e-83
 Identities = 194/565 (34%), Positives = 298/565 (52%), Gaps = 18/565 (3%)

Query: 1   MDKPWLSRYPKDVPETINPDQYPSLVEMFEQSVHKYADQPAFMNMGAVMTFRKLEERSRA 60
           M +P +S +P  +PE   P +   L ++ + +++ Y ++ A   +G   T+ ++ +  R 
Sbjct: 1   MPQPAISAFPS-IPEPAIPPRL--LTDLLDNALNLYPERVAIDFLGRTWTYAQVGQLVRR 57

Query: 61  FAAYLQNDLKLKKGDRVALMMPNLLQYPVALFGVLRAGMIAVNVNPLYTPRELEHQLNDA 120
            A  LQ D  L+KGDR  L +PN   + +  F  LR G I VN NPLYT RELEHQ+ D+
Sbjct: 58  AARGLQ-DQGLRKGDRFGLCLPNCPYFAILYFAALRVGAIVVNFNPLYTERELEHQIRDS 116

Query: 121 DARAIVI--VSNFANTLEQIVANTQVKHVVLTSLGQMLPRAKGTIVDFVVKYVKGMVPKY 178
             R + +  V      ++ +     +  +VL  +  MLP  +G  + F +   K      
Sbjct: 117 GTRMMAVPDVRIIHEKVQAVAPRAGLDKIVLCGMRDMLPWLQG--LGFALFKRKDHARIL 174

Query: 179 DLPGAISMRKALHKGRRLQYVKPFMSGEDIAFLQYTGGTTGVAKGAILTHRNMVANVLQA 238
           D    + ++  L        V+     +D+A LQYTGGTTGV KGA+LTH N+ AN  Q 
Sbjct: 175 DEGLHVRLKALLAHDAEPDAVE--RHPDDVAVLQYTGGTTGVPKGAMLTHANLTANSAQM 232

Query: 239 KGAYGPVLQEGRELVVTALPLYHVFALTVNCLLFIEMGGRNLLITNPR-DIPGFVKELQK 297
               G  L+  +E  +  LP++HVFALT      +E+G   +L+  PR ++   ++ +++
Sbjct: 233 VVHVGG-LRPQQERTLGVLPMFHVFALTTVLNFSVEIGAEIVLL--PRFEMKQVLRTMKR 289

Query: 298 YPFTAITGVNTLFNALVNNEDFHELDFKNMKLAVGGGMAVQRAVAERWKKTTGVHLLEGY 357
            P T   GV T++ AL    D    D   ++  + GG  +   V E ++  T   ++EGY
Sbjct: 290 KPPTQFFGVPTIYVALNALPDDEIPDLSAVRACISGGAPLPLEVREEFEARTRARVVEGY 349

Query: 358 GLTECSPLVTGNPYDLTDYTGAIGLPVPST--EVRIVDDAGNVVPNDQVGELQVRGPQVM 415
           GL+E +P++  NP   T    + G   P T  E+R  ++   V+P  + GE+  RGPQVM
Sbjct: 350 GLSETAPIIACNPLFGTVKDNSCGPSFPGTIIEIRDPENPSRVLPQGERGEVCARGPQVM 409

Query: 416 QGYWQRPEATKEVLNAEGWLSTGDIVKFDDQGLIHIVDRKKDMILVSGFNVYPNEIEDVV 475
           +GYWQRP  T  V   +G L TGDI  FD+ G + +VDR KD+I   G+NVYP  IED  
Sbjct: 410 KGYWQRPAETSAVF-VDGALRTGDIGYFDEDGYLFLVDRIKDIIFCGGYNVYPRIIEDAA 468

Query: 476 ALHGKVLEVAAIGQANDVSGELVKIYVVKRDPS-LTKDEVIAHCRKHLTGYKVPKLVEFR 534
             H  V E  AI   +   G+  K+++   + S LT DE+    +  L+  ++PK   FR
Sbjct: 469 YQHPAVKEAIAIAIPDAYRGQSPKLFIALHEGSNLTVDELKVFLQDRLSKIEMPKAFAFR 528

Query: 535 DDLPKTNVGKILRRVLREENDAQLA 559
           D LPKT +GK+ ++ L EE + +LA
Sbjct: 529 DSLPKTLIGKLSKKDLIEEENKKLA 553