Pairwise Alignments

Query, 381 a.a., ribonuclease D from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Ribonuclease D from Pseudomonas sp. DMC3

 Score =  213 bits (541), Expect = 9e-60
 Identities = 125/359 (34%), Positives = 199/359 (55%), Gaps = 9/359 (2%)

Query: 20  LQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVLDEMTPFVELLQ 79
           L + C   +    V LDTEF+R  TF+P  GL+Q+ DG+   LIDP  ++   P   LL+
Sbjct: 14  LAQFCAEWQQLPFVALDTEFMRVDTFYPIAGLLQIGDGKRAYLIDPLTINAWQPLAALLE 73

Query: 80  DTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAALVQDQLQVELD 139
           + +VLKVLHAC EDLEV     G  P P+ DTQ+ AA+L  G S G++ LVQ+ L ++L 
Sbjct: 74  NPAVLKVLHACSEDLEVLLRLTGSLPAPLFDTQLAAAYLNLGFSMGYSRLVQEVLGIDLP 133

Query: 140 KSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVT--QAGWWDAALQESELQVAK 197
           K E+R+DWL RPLS+ Q+ YAA D  +L  ++ +L  +++  +  W    L++    VA 
Sbjct: 134 KGETRSDWLQRPLSETQISYAAEDAVHLAEVFVELRPKLSDDKFAW---VLEDGAELVAN 190

Query: 198 RTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIKETDLLTISR 257
             + ++P   Y + K AW+L   +LA+L+ L  WR  EA  RDL  N +++E  L  ++R
Sbjct: 191 LRRETDPYEVYREAKLAWKLSRAQLAVLRELCAWREKEARARDLPRNRIVREHSLWPLAR 250

Query: 258 LALRSPKRMEE-EGVDPHAIRRHSSKIIAMVKTALETPADAYPPEIVPIMEYPGYKQLFK 316
               +   + + E + P  +R+    ++ ++K +     D +PP +   +       L K
Sbjct: 251 TQPDNLAALGKIEDMHPRTVRQDGQFLLDLIKRSGSVGPDQWPPAVPEPLPIEA-AALIK 309

Query: 317 RLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRLPLLGEKL 375
           +L+   ++ +   G+A E +  KK L  L+   +     P +LPD ++GWR  LLG+KL
Sbjct: 310 QLRALGQAEAERLGIAPELMLRKKTLEALVKSGF--PEGPYQLPDSLRGWRRELLGQKL 366