Pairwise Alignments

Query, 381 a.a., ribonuclease D from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., Ribonuclease D from Alteromonas macleodii MIT1002

 Score =  290 bits (743), Expect = 4e-83
 Identities = 155/379 (40%), Positives = 224/379 (59%), Gaps = 8/379 (2%)

Query: 9   VNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL 68
           + YQ+I+    L++VC AA+  + V LDTEFVRT+T  P LGLIQ++DG  L LIDP  +
Sbjct: 1   MQYQLITTSEQLEKVCTAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI 60

Query: 69  DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128
           D M PF++L+++T V+KVLH+C ED+E F  AF   P P+ DTQ+  + L  G S G+A 
Sbjct: 61  DNMQPFIDLMENTEVVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMGPSLGYAK 120

Query: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAAL 188
           LV+    + LDK ESRTDWLARPL + QL YAA DV YLLP Y++L  +V +AG      
Sbjct: 121 LVELLCDISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIY 180

Query: 189 QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK 248
           QE  L V K+      + AYL IK  W+L  ++L +L+ LA WR + A  +DLALNFV K
Sbjct: 181 QEIALLVDKKRAQMPEDFAYLSIKNNWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFK 240

Query: 249 ETDLLTISRLALRSPKRMEE-EGVDPHAIRRHSSKIIAMVKTA----LETPADAYPPEIV 303
           E  L   ++  + S   +    GV+  ++RR+   II +++ A     +TP     P ++
Sbjct: 241 EGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEARAKYAQTPEKLRLPVVL 300

Query: 304 PIMEYPGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVW---KRDRDPARLP 360
            +++   YK+    LK     ++  + + ++ +ASKKQLNQLL W W      R    +P
Sbjct: 301 RLIDIAKYKKTLAELKVISDQIAKDNAVNSDVIASKKQLNQLLKWYWFSVDETRVQGLMP 360

Query: 361 DLMQGWRLPLLGEKLNTLV 379
           D++  WR PL    +  L+
Sbjct: 361 DVLSTWREPLFRSHVTRLL 379