Pairwise Alignments

Query, 387 a.a., benzoate transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Inner membrane protein YdcO from Xanthobacter sp. DMC5

 Score =  247 bits (631), Expect = 3e-70
 Identities = 136/376 (36%), Positives = 213/376 (56%), Gaps = 1/376 (0%)

Query: 8   LSHLSAGFTTVLVGYTSSVVIVIQAATASGANPTQIESWLLTLGVVMGLTSILYSWFYKT 67
           +S + + F   LVG+  ++ +++ AA A GA+P Q  SW+  L + +  +S   S  ++ 
Sbjct: 3   VSAIVSAFVAALVGFGGTLALILSAAAAVGASPAQASSWVAALCLAVAGSSAFLSIRHRL 62

Query: 68  PIVTAWSTPAAVMLAASAGQYSLPVVIGAFMFSGALFTLTGMLAPLTRALSKIPVPLGTA 127
           PI+TAWSTP A +LAA      +    GAF+ +G L      + PL   +++IPV +  A
Sbjct: 63  PIITAWSTPGAALLAAFGAGIGMERAAGAFLVAGLLMVACAAVKPLGTLVARIPVAVAAA 122

Query: 128 MLGAILLPFCAKAFTPLTDTPALFALLFTSYLLAKHLVPRYTMLVLLLVSLGSALALGSF 187
           ML  +L+ F          +PAL   +  ++ L + L P +++   L+  + +AL LG+ 
Sbjct: 123 MLAGVLVRFVTALAEHAVKSPALVLPVVAAFFLTRRLAPSWSVPAALVAGIAAALGLGAV 182

Query: 188 QHADLALRIATPIWVMPEFDWLAILNLALPLYLITMLSQNLPGIAMLKSYQYDAPIKPIL 247
                A  ++  +WV PEFD   ++++ALPL+L+TM SQNLPG A+L +  Y  P++ IL
Sbjct: 183 GPMP-APELSALVWVTPEFDSGVLISIALPLFLVTMASQNLPGFAVLTASGYVPPVRSIL 241

Query: 248 VGTGLATLMSAPFGGFSVNLAAISAAICMNEDVDQDKAQRYRAVLWAGGFYLLAGIFAAL 307
             TG+A++++APFG  + NLAAI+AA+C   D D D   R++A      FYLL     A 
Sbjct: 242 ATTGIASVLTAPFGAHASNLAAITAALCTGPDCDPDPRARWKAGPVYALFYLLLAAAGAS 301

Query: 308 VVNLFLALPKPISAMLAGLALLGTLMMCLQSAFKIDEYREPALLTFVITLSGATLFGMSA 367
           +V +F ALP  + A +AGLAL+  L   L +A  +D+ R  A++TF  T SG +  G+ A
Sbjct: 302 LVAVFAALPPALVATIAGLALIAPLTGSLTAALNVDKDRTAAIVTFATTASGISALGLGA 361

Query: 368 TLIGLVIGLAYLRLTT 383
            + GL  GLA   + T
Sbjct: 362 PVWGLAAGLAVFAMDT 377