Pairwise Alignments

Query, 387 a.a., benzoate transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., Inner membrane protein YdcO from Alteromonas macleodii MIT1002

 Score =  327 bits (839), Expect = 3e-94
 Identities = 175/390 (44%), Positives = 240/390 (61%), Gaps = 10/390 (2%)

Query: 6   FNLSHLSAGFTTVLVGYTSSVVIVIQAATASGANPTQIESWLLTLGVVMGLTSILYSWFY 65
           + LSH+SAG T V VGY+SSVVI+I  A  +GA+   + SWLL LG+ MG+T IL+SW  
Sbjct: 4   WKLSHISAGLTAVTVGYSSSVVIIIDVARKAGASDDMVVSWLLALGLGMGITCILFSWLS 63

Query: 66  KTPIVTAWSTPAAVMLAASAGQYSLPVVIGAFMFSGALFTLTGMLAPLTRALSKIPVPLG 125
           K P+VTAWSTP A  L  S G+Y L   IGAF+    L  +T     L + +S+IP  + 
Sbjct: 64  KLPVVTAWSTPGAAFLLTSIGEYRLSEAIGAFILCALLSLVTAQSRSLLKQISRIPPAIS 123

Query: 126 TAMLGAILLPFCAKAFTPLTDTPALFALLFTSYLLAKHLVPRYTMLVLLLVSLGSALALG 185
           +A+L  ILLP C   F+ + D P L AL   +YL+   L PRY ML+LL++S+  +L + 
Sbjct: 124 SALLAGILLPICLAIFSDVNDAPYLVALFIAAYLVGSRLFPRYLMLLLLVMSVTISLFMS 183

Query: 186 SFQHA----------DLALRIATPIWVMPEFDWLAILNLALPLYLITMLSQNLPGIAMLK 235
           S                   +  PIWV P F   A + LA PL+LIT LSQNLPGIA+  
Sbjct: 184 SADGVVALPSDSPGLSSMFTLPEPIWVTPTFSLSAAIGLAFPLFLITTLSQNLPGIAIHH 243

Query: 236 SYQYDAPIKPILVGTGLATLMSAPFGGFSVNLAAISAAICMNEDVDQDKAQRYRAVLWAG 295
           ++ Y    KPIL G  +   + APFGGFS NLAAI+AA+CM E  D +K+QRY+A + AG
Sbjct: 244 AHGYTPDHKPILSGIAIVQALLAPFGGFSFNLAAITAALCMGEQADNEKSQRYKAAIAAG 303

Query: 296 GFYLLAGIFAALVVNLFLALPKPISAMLAGLALLGTLMMCLQSAFKIDEYREPALLTFVI 355
             YL  G+ A++VV LF+++P  I  +LAGLALL TL   +  A +++ +R PALLT + 
Sbjct: 304 VAYLFMGLLASVVVALFVSMPSIIIHLLAGLALLATLQGAVVRAMEVEHHRAPALLTMLC 363

Query: 356 TLSGATLFGMSATLIGLVIGLAYLRLTTRP 385
           T SG +L+ M++ + GL +GL  L +  +P
Sbjct: 364 TASGFSLYSMTSAVWGLGLGLLLLYVQKKP 393