Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  192 bits (489), Expect = 3e-53
 Identities = 184/680 (27%), Positives = 304/680 (44%), Gaps = 61/680 (8%)

Query: 16  VKTKILVTFSVVGILVTALGIWTIKTMYSSSSGLSYIVGPAWDTADGAMETTIQIEAQM- 74
           V  K+ + F +V +L + L +    T ++S  GL  I    W      M    Q+ A + 
Sbjct: 10  VNLKLGLGFGLVLVLTSILAL----TGWTSLGGL--IDRSNW------MSDITQLNASLT 57

Query: 75  -LAVNRL--ILGEDSQRVEQILNTAITDVDTSSSRMIEAGLLSAAQTQQFSQFNSQ---- 127
            L + RL  +L    + V Q + T +        ++I+    S    +     N Q    
Sbjct: 58  KLRIVRLQYMLANGDEAVAQNVQTNLDAFAAQQQKLID----SFKSPENLKLLNEQKSII 113

Query: 128 --YQQSRNTLITSYKNYIETKKSYDKATQVLVDFGEKLETLGDSAVEELEREPNRNITWQ 185
             YQQS N +  +Y+N        + + QV+   G+K + + ++ +  LE    + +   
Sbjct: 114 TAYQQSLNKMREAYRNG-------NASRQVM---GDKAD-IANAQINALETSV-KQMPDS 161

Query: 186 SDVMERWQA-ADGGMESNIGLLWKLYYTQRLLDGQDDATQIKAIEQAIGFQKQANSEMFS 244
           S+ + ++QA AD  M+  +       YT  +   + +A     IE+AI   K  N+    
Sbjct: 162 SEHLAQFQAVADAKMQFQLARYEVRGYTGNV-SPETEARAAAQIEKAIAGLKDLNATF-- 218

Query: 245 TGRFTISAGEEWKNASYEEVFSQLNSQHEQAMMAVIESYRNYRQIYQEYTVTSLALLDFI 304
                         AS +   + L    E A+ A   + +NY+            +    
Sbjct: 219 -------------GASQQSALTAL----ETALGAYRSAVQNYKAANANIVTARAEMTTQG 261

Query: 305 AELEELADSKVEQQAVLILDGQAWAISSFKVLIIIALLVLLLLGWILVNQILSPIQRLQE 364
           A++  ++D   E Q        A A S   +  ++ALLV ++   ++  QI  PIQ    
Sbjct: 262 ADIVTISDKLYEIQLTRRDAESAQARSLQLISTLLALLVGVIAALVITRQITRPIQETLA 321

Query: 365 RVTDISEGNGDLTLRVNITTQDEFGELGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLS 424
            V  I+  +GDL+  + +T +DE G L +   +    ++ LI+ I        +AA +LS
Sbjct: 322 VVERIA--SGDLSHNIQVTRRDELGVLQQGIQRMGTTLRELISGIRDGVTQIASAAEELS 379

Query: 425 ATFKVTAEAVNKQTFEVNTISNATTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVR 484
           A  + T+  VN Q  E + ++ A   MTA   +V   A + S +  + D  A++    V 
Sbjct: 380 AVTEQTSAGVNSQKIETDQVATAMHEMTATVQEVARNAEQASLAAADADGQARAGDKVVA 439

Query: 485 QAAQSVNELVAEVTQGTETINSLKNHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGE 544
           +A   +  L AEV + T+ +  L+     I  V+  I  +AEQTNLLALNAAIEAARAGE
Sbjct: 440 EAIAQIERLAAEVARSTDAMTHLQQESNKIGSVMDVIKAVAEQTNLLALNAAIEAARAGE 499

Query: 545 QGRGFAVVADEVRSLATRTQGSTNTIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQ 604
            GRGFAVVADEVR LA RTQ ST  I+  +  L++   +   V+NNS      + E+T +
Sbjct: 500 AGRGFAVVADEVRGLAQRTQKSTEEIEGLVAGLQNGTQQVANVMNNSRSLTDSSVELTRK 559

Query: 605 AEESLHQVAIEISRLTQMNQQTSEAITHQEQSVTSIASSLSHLQALCQSAQEKIQQSEHT 664
           A  SL  +   +S +  MNQQ + A   Q      I+ S+ +++ + +       ++  +
Sbjct: 560 AGVSLENITRTVSNIQSMNQQIAAAAEQQSAVAEEISRSIVNVRDVSEQTATASDETAKS 619

Query: 665 ISALKLKQEDLALKMSKFKI 684
              L      L   +S F++
Sbjct: 620 SVELARLGSQLQQMVSHFRV 639