Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  179 bits (454), Expect = 3e-49
 Identities = 111/357 (31%), Positives = 185/357 (51%), Gaps = 6/357 (1%)

Query: 328 WAISSFKVLIIIALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDE 387
           W IS     I++A L+ +++G ++   I  PI +  +    I++G  DLT  +     DE
Sbjct: 190 WMISG----IVLAFLIAIIIGVLITRLITRPIAQAVQSAQRIAQG--DLTQAIITERTDE 243

Query: 388 FGELGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNA 447
            G+L  +       +++ + +I  +++   +AA +LSA    ++  + +Q  E+   + A
Sbjct: 244 AGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATA 303

Query: 448 TTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSL 507
              MTA   +V S A   S++       A+     V QA   ++ +V E+   T+++  L
Sbjct: 304 VNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADL 363

Query: 508 KNHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGST 567
              V  I  V+  I GIA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ ST
Sbjct: 364 AGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQIST 423

Query: 568 NTIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTS 627
             I++ I  +++ AD++V  +N S+     T  +   A E+L ++   ++++ + N   +
Sbjct: 424 VDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRITASVAKINERNLVIA 483

Query: 628 EAITHQEQSVTSIASSLSHLQALCQSAQEKIQQSEHTISALKLKQEDLALKMSKFKI 684
            A   Q Q    +  +L ++Q L         Q+  +   L        + +SKF++
Sbjct: 484 SASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRLATSFNVLVSKFQL 540



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 101/537 (18%), Positives = 196/537 (36%), Gaps = 70/537 (13%)

Query: 14  MRVKTKILVTFSVVGILVTALGIWTIKTMYSSSSGLSYIVGPAWDTADGAMETTIQIEAQ 73
           M++ TK+L++F +  ++  A+G+  IK +   S+ L         +      T   + A 
Sbjct: 1   MKISTKLLLSFLLCALVTLAVGLLGIKGVVRLSTALELTFSNNLVSVSNTAATLNGLVAH 60

Query: 74  MLAVNRL-------ILGEDSQRVEQIL---------------NTAITDVDTSSSRMIE-- 109
              + RL       +  +D  RV Q +                T + D + ++   ++  
Sbjct: 61  NRGLYRLMDASKGDVSPQDRDRVRQDIAQELKRSQASYATYRATPLEDDERAAGDKLDQI 120

Query: 110 -AGLLSAAQTQQFSQFNSQYQQSRNTLITSYKNYIETKKSYDKATQVLVDFGEKLETLGD 168
               +S+++         Q  Q+R  L TS     E  +   +  +V+++   +    G 
Sbjct: 121 WPTYISSSERIMALLDGGQVDQARAQLNTSNN---ELFRQARELIRVMIESNNRQIKEGA 177

Query: 169 SAVEELEREPNRNITWQ-SDVMERWQAADGGMESNIGLLWKLYYTQRLLDGQDDATQIKA 227
            A +EL    N  +TW  S ++  +  A       IG+L     T+ +      A +I  
Sbjct: 178 VAADELR---NSALTWMISGIVLAFLIA-----IIIGVLITRLITRPIAQAVQSAQRIAQ 229

Query: 228 --IEQAIGFQKQANSEMFSTGRFTISAGEEWKNASYEEVFSQLNSQHEQAMMAVIESYRN 285
             + QAI  ++   +         +  G +           QL S  E+      ES R 
Sbjct: 230 GDLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRG 289

Query: 286 YRQIYQEYTVTSLALLDFIAELEELAD-----SKVEQQAVLILDGQAWAISSFKVLIIIA 340
             +   E    + A+    A ++E+A      S+  +QA    +     +    V  + +
Sbjct: 290 LTRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQ-AVSGMSS 348

Query: 341 LLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLT--LRVNITTQ-DEFGELGKSF-- 395
           ++V +      V  +   ++ +  +V D+  G  D T  L +N   +    GE G+ F  
Sbjct: 349 MVVEINDSTQSVADLAGQVREI-GKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAV 407

Query: 396 -------------------DKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNK 436
                              +K I  +Q    D   + N + T A +     +   EA+ +
Sbjct: 408 VADEVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQR 467

Query: 437 QTFEVNTISNATTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNEL 493
            T  V  I+     + + S +    ARE+ +++LNI   +  T +   Q   S  +L
Sbjct: 468 ITASVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDL 524