Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  191 bits (486), Expect = 6e-53
 Identities = 111/349 (31%), Positives = 188/349 (53%), Gaps = 13/349 (3%)

Query: 328 WAISSFKVLIIIALLVLLLLGWILVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDE 387
           W I+   + +++   V+++    +++    P+ RL   V ++S+GNGDLT R+ + ++DE
Sbjct: 224 WKIT---LALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDE 280

Query: 388 FGELGKSFDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNA 447
            G++  S + FIEK+Q +  D+  S+     A V LS   +     +N+ T E      A
Sbjct: 281 IGQICNSINLFIEKLQQMFIDVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITA 340

Query: 448 TTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSL 507
              M+A +  +   A + +      ++ A  +   V +A  SVN LV +V+   ETI  +
Sbjct: 341 IEEMSASAGSIAQSADDAALLTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRM 400

Query: 508 KNHVTSIEPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGST 567
                 I  VL  I  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA+RTQ ST
Sbjct: 401 SEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASRTQQST 460

Query: 568 NTIQQSITQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTS 627
           + I   +  L+++ +  V+ ++++ +   +T E T+   +SL+ V   ++ +  +N   +
Sbjct: 461 SQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVVTDSVAEMNNLNTLIA 520

Query: 628 EAITHQEQSVTSIASSLSHLQALCQ----------SAQEKIQQSEHTIS 666
            +   Q Q    ++ +++ +Q + +          S   ++Q + H +S
Sbjct: 521 TSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVTSVSNELQNTSHALS 569



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 37/199 (18%)

Query: 351 LVNQILSPIQRLQERVTDISEGNGDLTLRVNITTQDEF------------GELGKSFDKF 398
           LVNQ+ S  + +     D  + N  L +   I  Q               GE G+ F   
Sbjct: 386 LVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARAGEQGRGFAVV 445

Query: 399 IEKIQNLIADITQSTNLAKTAAVDLSATFK--------------VTAEAVNKQTFEVNTI 444
            ++++ L +   QST+        L  T +               TAE  N     +N +
Sbjct: 446 ADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERTNHVMDSLNVV 505

Query: 445 SNATTAMTAISSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETI 504
           +++   M  +++ + + A E  Q    + KN  +           + E+V ++      +
Sbjct: 506 TDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAA-----------IQEMVRKLNMNAAQV 554

Query: 505 NSLKNHVTSIEPVLADING 523
            S+ N + +    L+D+ G
Sbjct: 555 TSVSNELQNTSHALSDVVG 573