Pairwise Alignments

Query, 684 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  190 bits (482), Expect = 2e-52
 Identities = 133/396 (33%), Positives = 199/396 (50%), Gaps = 21/396 (5%)

Query: 278 AVIESYRNYRQIYQEYTVTSLALLDFIAELEELADSKVEQQAVLILDGQAWAISSFKVLI 337
           A + S +  +++ ++ TV   A     A   E+ D+   Q   L+            V  
Sbjct: 245 AQLASEQALQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLT-----------VAT 293

Query: 338 IIALLVLLLLGWILVNQILSPIQ---RLQERVTDISEGNGDLTLRVNITTQDEFGELGKS 394
           ++AL + LL  W +  QI+ P++   R  ERV      +GDLT  + +  +DE G+L  S
Sbjct: 294 VLALALGLLAAWAITRQIIIPLRQTLRAAERVA-----SGDLTQSLQVQRRDELGQLQAS 348

Query: 395 FDKFIEKIQNLIADITQSTNLAKTAAVDLSATFKVTAEAVNKQTFEVNTISNATTAMTAI 454
             +  + ++ LI  I        +AA +LSA  + T+  VN Q  E + ++ A   MTA 
Sbjct: 349 MHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTAT 408

Query: 455 SSQVISGAREISQSVLNIDKNAQSTLSNVRQAAQSVNELVAEVTQGTETINSLKNHVTSI 514
             +V   A + S++ L  D+ A+     V +A   +  L +EV   +E +N LK     I
Sbjct: 409 VHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKI 468

Query: 515 EPVLADINGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLATRTQGSTNTIQQSI 574
             VL  I  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVRSLA RTQ ST  I++ I
Sbjct: 469 GSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELI 528

Query: 575 TQLRSSADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQE 634
             L+S       V++NS      + E+T +A  SL  +   +S +  MNQQ + A   Q 
Sbjct: 529 AGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQT 588

Query: 635 QSVTSIASSLSHLQALCQSAQEKIQQSEHTISALKL 670
                I  S+ +++ +  S Q      E   S+++L
Sbjct: 589 AVAEEINRSVMNVRDI--SDQTSAASEETASSSVEL 622



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 67/343 (19%), Positives = 123/343 (35%), Gaps = 56/343 (16%)

Query: 391 LGKSFDKFIEKIQNLIADITQSTNLAKTA-AVDLSATFKVTAEAVNKQTFEVNTISNATT 449
           LG S DK ++ I  +   + Q  N+ +   AVD+SA  +     V   T+  N      T
Sbjct: 140 LGSSADKAVDLIGRVQRSLLQGANINQYQHAVDVSALLQQARFQVRGYTYSGNA-DYQQT 198

Query: 450 AMTAISSQVIS----GAREISQSVLNIDKNAQSTLSNVRQA------AQSVNELVAE--V 497
           A+ AI   +       A+  ++   ++D +A + +   R A      AQ  +E   +  V
Sbjct: 199 ALKAIDQALAELRALPAKVPAEHAASLD-DAATAMGGYRDAVTQFGNAQLASEQALQRMV 257

Query: 498 TQGTETINSLKNHVTSIEPV----LADINGIAEQTNLLALNAAIEAA------------- 540
            QGT  + + +    S   V     A    +     +LAL   + AA             
Sbjct: 258 EQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLAAWAITRQIIIPLRQ 317

Query: 541 --RAGEQGRGFAVVADEVRSLATRTQGSTNTIQQS------------------ITQLRSS 580
             RA E+        D  +SL  + +     +Q S                  +TQ+ S+
Sbjct: 318 TLRAAER----VASGDLTQSLQVQRRDELGQLQASMHRMTQGLRELIGGIGDGVTQIASA 373

Query: 581 ADESVRVINNSMLKGTQTTEITSQAEESLHQVAIEISRLTQMNQQTSEAITHQEQSVTSI 640
           A+E   V   +          T Q   +++Q+   +  + +  +Q SEA    +Q     
Sbjct: 374 AEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALMADQQAREG 433

Query: 641 ASSLSHLQALCQSAQEKIQQSEHTISALKLKQEDLALKMSKFK 683
              +    A  +    ++  S   ++ LK + + +   +   K
Sbjct: 434 DRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIK 476