Pairwise Alignments

Query, 626 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score =  113 bits (283), Expect = 1e-29
 Identities = 119/404 (29%), Positives = 180/404 (44%), Gaps = 55/404 (13%)

Query: 8   TTALLTERRFLPYFITQFLGAFNDN--IFKNVLLLFVAFAGPQALPISSNLFINLAAGLF 65
           T   L  +      + QFL AF DN  +F  + LL   F    + PI   +F+       
Sbjct: 7   TNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVGA----- 61

Query: 66  ILPFFLFSATAGVLADKLEKSRYIRWVKLLEIAIMLCGAIGFITQSYGISLFLLF-LMGT 124
              + LF+   G +AD   K R + +   L++       +G  +  +GI+ FL + L+G 
Sbjct: 62  ---YILFAPFVGQVADSFAKGRVMMFANGLKL-------LGAASICFGINPFLGYTLVGV 111

Query: 125 QSAFFGPVKYALLPQQLKSEELVPGNALVETGTFLAILLGTLGAGLIASADNAHYFAAAA 184
            +A + P KY +L +     +LV  N L+E  T  AILLG++  G++A   + H   A A
Sbjct: 112 GAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLA---DWHVLVALA 168

Query: 185 VVIFAVLGYLSSRA-IPLAPASAPHLEFRWQPITQTKQTLRIAK---RDRAIFQSIMAIS 240
               A  G + +   IP   A+ P     W  I  T+  L       R+     S++  S
Sbjct: 169 ACALAYGGAVVANIYIPKLAAARPGQS--WNLINMTRSFLNACTSLWRNGETRFSLVGTS 226

Query: 241 WFWFLGAGYLTQFPNF----TKLHLNGNEAAVSFLLALFSVGIAVGSLACDKLSGHRIEV 296
            FW  GAG   +F         L +  N A  ++L A+ ++GI VG+ A  KL       
Sbjct: 227 LFW--GAGVTLRFLLVLWVPVALGITDN-ATPTYLNAMVAIGIVVGAGAAAKL------- 276

Query: 297 GIVPLGSVGISFFGYLMATSIPADLPIFSTFADFVTYSALWPLFAYLLLIGVFGGVFIVP 356
             V L +V         +  +PA + I      F     L P +A L+LIGV GG F+VP
Sbjct: 277 --VTLETV---------SRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVP 325

Query: 357 LYAMLQQRAKVTERA-QVIAALNIYNSLFMVGSAALGIVCLSVL 399
           L A+LQ+R K +  A   IA  N+  +  M+    LGI  L+V+
Sbjct: 326 LNALLQERGKKSVGAGNAIAVQNLGENSAML--LMLGIYSLAVM 367