Pairwise Alignments

Query, 309 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., Probable transcription regulator protein of MDR efflux pump cluster from Variovorax sp. SCN45

 Score =  145 bits (367), Expect = 9e-40
 Identities = 87/291 (29%), Positives = 156/291 (53%), Gaps = 4/291 (1%)

Query: 15  LNELKRIVIFNKVVECGSFTCAAEALGMTKSKVSEQITALEKTLNVRLLNRTTRKISLTT 74
           +++++ + IF +VVE G+FT AA++L + K  V++QI ALE  L V+LLNRTTR++++T 
Sbjct: 1   MDQIQAMRIFVRVVEAGTFTRAADSLALPKGTVTKQIQALESRLRVKLLNRTTRRVTVTP 60

Query: 75  EGDTFYQRSHGLLNIAEEALCSVNHLASEVSGTIRIGTTIDVGTFLLNPLLAEFYKQYPK 134
           +G  +++R+  LLN  ++   S+ +  +  +G +RI     V   ++ P LA F  +YP 
Sbjct: 61  DGAAYFERAARLLNDFDDMEASMTNAQANPTGRLRIDIGTSVARLVILPALATFCDRYPD 120

Query: 135 VNFDIQLDDGLQDLVDSNLDMVIRIGELTSSSLVGRVIAPFELGIYASQTYLENAPPINT 194
           +  D+ + D   DL+  N+D VIR GEL+  SLV R I        AS  Y++       
Sbjct: 121 IQVDLGVSDRTVDLISDNVDCVIRAGELSDQSLVARRIGTLHFVTVASPAYIKRYGMPQH 180

Query: 195 IQDLEQHDWVYLTRLNLPNQTLTLTNQEGVQHQVKFHSKH--SSNSPLGVMTMVQNGLGV 252
             D+E+   V         +      ++G   Q++ +  +  S N     +  V  G G+
Sbjct: 181 PNDIEKRHHVVSYFSGTTRRVYPHEFKKG-DEQIELNGPYRVSVNESNAHIAAVLGGFGI 239

Query: 253 GSIASFLIDKLPDA-SLVRLFPDFYQISTTMNILYPSRKNLPPRVRLFIDY 302
               +F+ + L ++  LV + PD+ +    ++++YP  ++L  +VR F+D+
Sbjct: 240 SQCITFMAEPLLESGELVEVLPDWSRDPLPIHVVYPPNRHLSAKVRAFVDW 290