Pairwise Alignments

Query, 431 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 79.0 bits (193), Expect = 2e-19
 Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 21/228 (9%)

Query: 3   RIPALDSIRGLLLVLITFNHLIWYSGGTTILQMITHEPVGVFGAAEGFIFMSGLLAGMVY 62
           R P +D  RGL L+ I ++H+         L  IT   +G   AAE F+F++G  A + Y
Sbjct: 5   RDPRIDFFRGLALIFIFWDHV-----PHNPLGQITLRNIGFSDAAEVFVFLAGYAAVLAY 59

Query: 63  SRREYTDRQ--AAGKVWHRAFIIYKYHIAGLFIAM-LWFWLGSHYFAEQVTVFGGSFSNL 119
            +    D    A+ K+  RA+++Y  HI  L + M + F+  SH     +    G  ++ 
Sbjct: 60  GKILQRDGYWIASLKILRRAWVLYVVHIFLLAMLMGIVFFANSHVETRDLVEEMG-LTHF 118

Query: 120 PTMPFMTMLMSFLLLNKPAYLEILPLYIMYMLLFPLALYGFRRGYLKW-VLALSVLIWAS 178
            T P   +    LL  KP  ++ LPLYI+ +   PL L    R    W V+ +S+ ++  
Sbjct: 119 VTHPQQALTDELLLRFKPNLMDPLPLYIVLLSGLPLVLPLLLRK--TWAVVGVSLTVY-- 174

Query: 179 SGWIQGAMLLPLFKWLSAEYIPELGYFDPFAWQLLFFFGGALGYCKRQ 226
                  +L P   W        + YF+P  WQLLF  GGA     RQ
Sbjct: 175 -------LLAPWMGWNLRAIADGVWYFNPVTWQLLFVLGGAAAIHARQ 215