Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score =  110 bits (274), Expect = 6e-29
 Identities = 86/314 (27%), Positives = 142/314 (45%), Gaps = 10/314 (3%)

Query: 8   IAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACMQV 67
           IAA+ L++   + A      +  +K S  T  + H +G+A     K V +   G+  +Q 
Sbjct: 6   IAAACLSLALSSVAF----AQTTMKISISTAQNSH-QGVAIDTFAKEVEKRTGGRYKVQT 60

Query: 68  FPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSSA 127
           F N +L  + + +EA+  G  +LA  S      F  + +I D+PFLF D           
Sbjct: 61  FYNGSLGGERESIEAVQLGTQELAFSSTGPVPNFVPETKILDVPFLFRDKAHARAVLDGP 120

Query: 128 KGEELKNAMTRRGVKGLEFWHNGMKQISANK-PILVPADAKGLKFRVQASDVLVAQFEQI 186
            G+++      +G K L +  NG + ++ +K  +  P D KGLK R   + V +A ++  
Sbjct: 121 IGQDMLTKFDAKGFKALAWAENGFRHMTNSKRDVKAPEDLKGLKMRTMENPVHIAAYKGF 180

Query: 187 GANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSSK 246
           G     M+F E +  LQ   +DGQEN    I   K+ +VQ   + T H     + V +  
Sbjct: 181 GIITTPMAFPEVFTALQQGTVDGQENPLPVIISAKFDQVQKHLSLTGHVYSPCIFVMNKA 240

Query: 247 WWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTPE-QRQQWVD 305
            +D L A  +  F     E T    A   +V+E + + + +      T+     + ++V 
Sbjct: 241 TFDKLSAADKQAFLDAAKEGT---KANRARVDEDDAKGVADLRAKGMTVVDNVDKARFVA 297

Query: 306 ALKPVWQKFEKDIG 319
           AL PV  +FEKD G
Sbjct: 298 ALAPVNAQFEKDFG 311