Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., TRAP-type transport system, periplasmic component from Variovorax sp. SCN45

 Score =  131 bits (330), Expect = 2e-35
 Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 10/279 (3%)

Query: 6   TLIAASILAVTSFNAAANCDPGEIVIKFSHVTNTD-KHPKGIAASLLEKRVNEEMNGKAC 64
           T  AAS LA+    A A  +       + +  N    HP  + A  +   +  E NG+  
Sbjct: 11  TAAAASTLALPLRQALAQKN----AFNYKYANNLPVSHPMNLRAKEMADAIRAETNGQVD 66

Query: 65  MQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQ 124
           +Q+FPN+ L  D  VL  L +G V+    S            I  + F F D  +V +  
Sbjct: 67  IQIFPNNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFPDYASVWKAM 126

Query: 125 SSAKGEELKNAMTRRGVKGLE-FWHNGMKQI-SANKPILVPADAKGLKFRVQASDVLVAQ 182
               G  ++  + +  +  ++  W NG +QI S++KPI  PAD KG K RV  S +  + 
Sbjct: 127 DGDLGSHIRTQIAKANIVAMDKIWDNGFRQITSSSKPIASPADLKGFKIRVPVSPLWTSM 186

Query: 183 FEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVV 242
           F+ + A+P  ++FAE Y  LQTK++DGQEN  + I   K +EVQ   + +NH    +  +
Sbjct: 187 FKALEASPTSINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSMSNHMWDGFWFL 246

Query: 243 TSSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELN 281
            + + WD +PAD++   AK +N   +   A+   V ELN
Sbjct: 247 ANRRAWDKMPADLQAIVAKHINAAGMRERAD---VAELN 282