Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score =  127 bits (320), Expect = 3e-34
 Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 21/306 (6%)

Query: 43  PKGIAASLLEKRVNEEMNGKACMQVFPNSTLYDDDKVLE--ALLNGDVQLAAPSLSKFEK 100
           P G A  +    V E   G+  ++++P  +L   D+  E  AL  G + +A  S   +  
Sbjct: 45  PWGQAGKIWADMVKERTQGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSP 104

Query: 101 FTKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRRGVKGLEFWHNGMKQIS-ANKP 159
             K+  +F +PFL  D  A+D       G+E+   + + GV  L +  NG ++I+ + KP
Sbjct: 105 QVKQLNLFSMPFLMPDYAAIDALTQGEVGKEMFKTLEKAGVVPLAWGENGFREITNSKKP 164

Query: 160 ILVPADAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYG 219
           I  PAD KG+K RV  S +    F  +GANP +MS+A+    L +  +DGQEN       
Sbjct: 165 IKSPADIKGMKIRVVGSPIYSDMFTALGANPTQMSWADAQPALASGAVDGQENPLFLFTV 224

Query: 220 QKYFEVQDGTTETNHGILDYLVVTSSK--WWDGLPADVRDQFAKILNEVTIERNAES--- 274
            K   V      T   + D LV   +K  W    PAD       I+ +  I+   E    
Sbjct: 225 LKMQTVGQKFVTTWGYVADPLVFVVNKEIWASWTPAD-----QAIVRQAAIDAGKEEIVL 279

Query: 275 --NKVEELNKQYIIEAGGV---VRTLTPEQRQQWVDALKPVWQKFEKDIGADLI---EAA 326
               + E +K  + +  G+   V +LTP +R+++V A +PV+ K++  +G DL+   E A
Sbjct: 280 ARKGLVETDKPVLKDIAGMGVTVTSLTPAEREEFVKATRPVYDKWKSTVGTDLVAKAEQA 339

Query: 327 LAANQK 332
           +AA +K
Sbjct: 340 IAARKK 345