Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score =  127 bits (319), Expect = 4e-34
 Identities = 87/308 (28%), Positives = 144/308 (46%), Gaps = 6/308 (1%)

Query: 7   LIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACMQ 66
           LIA  ++A+T+ N            + + V   D  P   A   +   +++   GK  ++
Sbjct: 12  LIAIGLIALTASNVTT-----ARTFRSAEVHAKD-FPTNQAVKFMGDELSKATGGKDNIK 65

Query: 67  VFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSS 126
           +F +S+L  +   +E +  G + +   S + F     +  I  LPFLF D++   +    
Sbjct: 66  IFADSSLGSEKDTVEQVKIGALDMVRVSSASFHGIVPESVIPSLPFLFRDIEHFRKAMYG 125

Query: 127 AKGEELKNAMTRRGVKGLEFWHNGMKQISANKPILVPADAKGLKFRVQASDVLVAQFEQI 186
             G+++  A  + G  GL  + +G + + A KPI   AD KGLK RVQ SD++V+     
Sbjct: 126 PTGDKVLAAFEKAGFIGLCMYESGARSVYAKKPIKSVADMKGLKIRVQPSDLMVSLVSAA 185

Query: 187 GANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSSK 246
           GA+P  M  AE Y GL+T ++D  EN + +    K+FE     +ET H +   ++V S K
Sbjct: 186 GASPTPMPIAEVYTGLKTGLVDAAENNYPSYEEAKHFEAAPVYSETMHVMTPEVLVFSKK 245

Query: 247 WWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTPEQRQQWVDA 306
            WD L  + +    K   +            E+  K  +I+ G  +   +   R+ +VD 
Sbjct: 246 IWDTLTKEEQAAIRKAAKDSVPYYVKLWEPREKDAKAAVIKGGAKIVAASEIDRKGFVDV 305

Query: 307 LKPVWQKF 314
            KPVW KF
Sbjct: 306 EKPVWDKF 313