Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score =  143 bits (360), Expect = 7e-39
 Identities = 90/302 (29%), Positives = 143/302 (47%), Gaps = 10/302 (3%)

Query: 28  EIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACMQVFPNSTLYDDDKVLEALLNGD 87
           E VI+F H+ N D HP         + +  +  GK  +Q +P S L ++ +   AL  G 
Sbjct: 25  ERVIRFGHLNNAD-HPVSFGVKRFAELLAAKSGGKMKVQEYPASQLGNEMQQQSALQGGV 83

Query: 88  VQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSSAKGEELKNAMTRRGVKGLEFW 147
            Q++AP+ +      K++ + D PF   +    D       G+ L   +  +G+  L +W
Sbjct: 84  QQMSAPATTSLAGIVKEFGLVDFPFSVNNFAQADALLDGPLGQALIAKLPEKGLVALGYW 143

Query: 148 HNGMKQISANK-PILVPADAKGLKFRVQASDVLVAQFEQIGANPQKMSFAETYGGLQTKV 206
             G + ++ +K PI  P D +GLK RV  + V +  F+   ANP  M FAE YG L++K 
Sbjct: 144 DLGFRNVTNSKRPIAKPEDLEGLKIRVIPNPVFLETFKSFKANPVPMPFAELYGALESKA 203

Query: 207 IDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSSKWWDGLPADVRDQFAKILNEV 266
           +DGQEN +S I   K+FEVQ   + TNH     +V+ S K+WD L A  +    K++NE 
Sbjct: 204 VDGQENPYSVILSNKFFEVQKFVSATNHVYAANIVLVSKKFWDSLSAAEQ----KMMNEA 259

Query: 267 TIERNAESNKVEELNKQYII----EAGGVVRTLTPEQRQQWVDALKPVWQKFEKDIGADL 322
             E      +V     Q  I      G     ++  ++ +  +  KP   KF     A +
Sbjct: 260 ADEARGYQRQVSRAAAQKAIGDLQAKGAQFNEVSAAEQVRMREIAKPAIDKFASQYDAGI 319

Query: 323 IE 324
           ++
Sbjct: 320 VK 321