Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) from Pseudomonas putida KT2440

 Score =  105 bits (261), Expect = 2e-27
 Identities = 80/309 (25%), Positives = 137/309 (44%), Gaps = 14/309 (4%)

Query: 12  ILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKG----IAASLLEKRVNEEMNGKACMQV 67
           +LAV  F  +       + IKF+ +     HP G    +A   + K++ +  NG+   ++
Sbjct: 8   LLAVLPFAFSVAMPASALDIKFAEI-----HPAGYPTVVAEQNMGKKLEDASNGEITFKM 62

Query: 68  FPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQSSA 127
           F    L  + +V+E    G VQ+   SL           +F++PF+F D D + +     
Sbjct: 63  FAGGVLGSEKEVIEQAQIGAVQMTRVSLGIVGPVVPDVNVFNMPFVFRDHDHMRKIIDGE 122

Query: 128 KGEELKNAMTRR--GVKGLEFWHNGMKQISANKPILVPADAKGLKFRVQASDVLVAQFEQ 185
            G+E+ + +T     +  L +   G + I   KP+    D KG+K RVQ + + +     
Sbjct: 123 IGQEILDKITNSDFNLVALAWMDGGSRSIYTKKPVRSLEDLKGMKIRVQGNPLFIDMMNA 182

Query: 186 IGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTSS 245
           +G N   M   E +  LQT VIDG EN    +    +F+     T T H IL   VV S 
Sbjct: 183 MGGNGIAMDTGEIFSALQTGVIDGAENNPPTLLEHNHFQSAKYYTLTGHLILPEPVVMSK 242

Query: 246 KWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTPEQRQQWVD 305
             W+ L  + +    K+  E  +E  A  +     +++ +  AG  V  +T + ++ + D
Sbjct: 243 TTWNKLSPEQQALVKKVAREAQMEERALWDAKSAASEEKLKAAG--VEFITVD-KKPFYD 299

Query: 306 ALKPVWQKF 314
           A   V +K+
Sbjct: 300 ATASVREKY 308