Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  142 bits (358), Expect = 1e-38
 Identities = 94/333 (28%), Positives = 164/333 (49%), Gaps = 10/333 (3%)

Query: 6   TLIAASILAV--TSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKA 63
           TLIAA+  A   T F A+   D    +I+F +  N   + +G A  L  + V +   GK 
Sbjct: 7   TLIAATAAAALATPFAASWAQDIKPRIIRFGYGLNEISN-QGRATKLFAEEVEKASGGKM 65

Query: 64  CMQVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRF 123
            ++    + L  D ++ +AL+ G  ++   S +     TK+  I+D PFLF++    D  
Sbjct: 66  KIRAIGAAALGSDVQMQQALIGGAQEMMVGSTATLVGITKEMAIWDTPFLFDNAKEADVV 125

Query: 124 QSSAKGEELKNAMTRRGVKGLEFWHNGMKQISANKPILVPA-DAKGLKFRVQASDVLVAQ 182
                G+++ + +  +G+ GL +W NG + ++ NK  +    D  G+K RV  ++V +  
Sbjct: 126 LDGPVGQKVMDKLQEKGLVGLVYWENGFRNLTNNKRAVTKLEDMDGIKLRVMQNNVFIDS 185

Query: 183 FEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVV 242
           F+ +GAN   + F+E +  L+TK +DGQEN ++ I   K++EVQ   T TNH    ++V+
Sbjct: 186 FKTLGANAVPLPFSELFTALETKTVDGQENPYNTILSSKFYEVQKYLTVTNHVYSPWIVL 245

Query: 243 TSSKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGG---VVRTLTPEQ 299
            S K+WDGL    +D+   +L+     R+ E         + + +  G    +  L+P +
Sbjct: 246 VSKKYWDGLS---KDEHKVLLDAAKKSRDFERQDTRAEADKALADLKGKGMQINQLSPAE 302

Query: 300 RQQWVDALKPVWQKFEKDIGADLIEAALAANQK 332
             +  + L  V      ++G DL +   AA  K
Sbjct: 303 ANRMREKLAGVNSGIATNVGEDLWKETQAAVAK 335