Pairwise Alignments

Query, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  138 bits (348), Expect = 2e-37
 Identities = 96/324 (29%), Positives = 155/324 (47%), Gaps = 7/324 (2%)

Query: 6   TLIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACM 65
           TL+AA  LAVT+F A    D     IKF+   N   HP  +      + V  +  GK  +
Sbjct: 8   TLVAA--LAVTAFGAVHAQDK---TIKFA-TQNPKGHPIVMGMEKFAELVAAKSGGKIKV 61

Query: 66  QVFPNSTLYDDDKVLEALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRFQS 125
            +FP  TL  D   + A+  G +++A+ +   F    K++ I+D PF+F +    D    
Sbjct: 62  NLFPGGTLGSDQANVSAIQGGTLEMASMNSGIFASQVKEFAIYDFPFMFANTKEADAVVD 121

Query: 126 SAKGEELKNAMTRRGVKGLEFWHNGMKQISANK-PILVPADAKGLKFRVQASDVLVAQFE 184
              G++L + +  +G+ GL ++  G + I+ +K PI    D +GLK RV  + + V   +
Sbjct: 122 GPFGKKLHDKLQEKGLIGLAYYELGFRNITNSKRPITKLEDLEGLKLRVIPNPINVDWVK 181

Query: 185 QIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVVTS 244
            +GANP  + F E Y  L+ K IDGQEN  + I   K++EVQ     +NH      V+ S
Sbjct: 182 ALGANPTPLPFPEVYAALEQKAIDGQENPVTVINANKFYEVQKYVVLSNHQYNPQSVIIS 241

Query: 245 SKWWDGLPADVRDQFAKILNEVTIERNAESNKVEELNKQYIIEAGGVVRTLTPEQRQQWV 304
            K+WD L A  +   A    E    +  ++          + + G  V  L+P +  +  
Sbjct: 242 KKFWDTLDAAQKKIVADAAQESAKYQREQARGQVAAALDNMKKGGMQVTELSPAETDKLR 301

Query: 305 DALKPVWQKFEKDIGADLIEAALA 328
           D L+PV  KF   +G + +++  A
Sbjct: 302 DKLRPVIAKFAVAVGQETVQSLQA 325